View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18792_high_1 (Length: 548)
Name: NF18792_high_1
Description: NF18792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18792_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 81 - 529
Target Start/End: Original strand, 39851975 - 39852423
Alignment:
| Q |
81 |
tgccgtacgtacgacaccgacaagttgaaataccatacttaagggtaagtaacacactggtttttgtctacaaaaaactcactcaggcgtaggaagccta |
180 |
Q |
| |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39851975 |
tgccgtacgtaagacaccgacaagttgaaataccatacttaagggtaagtaacacactgttttttgtctacaaaaaactcactcaggcgtaggaagccta |
39852074 |
T |
|
| Q |
181 |
atctacattgccattaatattttatataatatgctatcctttttggcactccttataggagttgttccttcagaacaccttccatttttgttccttttcc |
280 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39852075 |
atctacattgccattaatattttatataatatgctatcctttttggcactccttataggagttgtttcttcagaacaccttccatttttgttccttttcc |
39852174 |
T |
|
| Q |
281 |
tatttgggctaataagcttatatttgggttaaaaatcatatcagatttatccaaattaaccctttgttcggaggcttcttggtaaagctttagaatttgc |
380 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| | |
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| T |
39852175 |
tatttgggctaataagtttatatttgggttaaaaatcatatcagatttatccaaattaaccctttgtccggaggcttcttggtaaagctttagaatttac |
39852274 |
T |
|
| Q |
381 |
atgataacagtcacctcttcaggtttagccccacaaaaaaggatgctatcatcagcataccaaagatgagtaatttcaggggcatttgtagctatagaaa |
480 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
39852275 |
atgataacagtcacctcttcaggtttagccctacaaaaaaggatgctatcatcagcatacaaaagatgagtaatttcaggggcatttgtagctatagaaa |
39852374 |
T |
|
| Q |
481 |
tgccatgaattaggccatcctgctgacttttagtgattaaaccagagag |
529 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
39852375 |
tgccatgaattaggccatcctgctgacttttagtaattaaaccagagag |
39852423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 381; E-Value: 0
Query Start/End: Original strand, 81 - 492
Target Start/End: Original strand, 39860645 - 39861057
Alignment:
| Q |
81 |
tgccgtacgtacgacaccgacaagttgaaataccatacttaagggtaagtaacacactggtttttgtctacaaaa-aactcactcaggcgtaggaagcct |
179 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
39860645 |
tgccgtacgtaagacaccgacaagttgaaataccatacttaaggataagtaacacactgttttttgtctacaaaaaaactcactcaggcgtaggaagcct |
39860744 |
T |
|
| Q |
180 |
aatctacattgccattaatattttatataatatgctatcctttttggcactccttataggagttgttccttcagaacaccttccatttttgttccttttc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39860745 |
aatctacattgccattaatattttatataatatgctatcctttttggcactccttataggagttgttccttcagaacaccttccatttttgttccttttc |
39860844 |
T |
|
| Q |
280 |
ctatttgggctaataagcttatatttgggttaaaaatcatatcagatttatccaaattaaccctttgttcggaggcttcttggtaaagctttagaatttg |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
39860845 |
ctatttgggctaataagcttatatttgggttaaaaatcatatcagatttatccaaattaaccctttgtccggaggcttcttggtaaagctttagaatttg |
39860944 |
T |
|
| Q |
380 |
catgataacagtcacctcttcaggtttagccccacaaaaaaggatgctatcatcagcataccaaagatgagtaatttcaggggcatttgtagctatagaa |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
39860945 |
catgataacagtcacctcttcaggtttagccctacaaaaaaggatgctatcatcagcatacaaaagatgagtaatttcaggggcatttgtagctatagaa |
39861044 |
T |
|
| Q |
480 |
atgccatgaatta |
492 |
Q |
| |
|
||||||||||||| |
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|
| T |
39861045 |
atgccatgaatta |
39861057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 81 - 489
Target Start/End: Original strand, 39855971 - 39856380
Alignment:
| Q |
81 |
tgccgtacgtacgacaccgacaagttgaaataccatacttaagggtaagtaacacactggtttttgtctacaaaa-aactcactcaggcgtaggaagcct |
179 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |||||||||||||||||||||||| |
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|
| T |
39855971 |
tgccgtacgtaagacaccgacaagttgaaataccatacttaaggataagtaacacactgttttttgtctacaaaaaaactcactcaggcgtaggaagcct |
39856070 |
T |
|
| Q |
180 |
aatctacattgccattaatattttatataatatgctatcctttttggcactccttataggagttgttccttcagaacaccttccatttttgttccttttc |
279 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
39856071 |
aatctacattgccattaatattttatataatatgctatcctttttggcactccttataggagttgttccttcagaacaccttccatttttgttccttttc |
39856170 |
T |
|
| Q |
280 |
ctatttgggctaataagcttatatttgggttaaaaatcatatcagatttatccaaattaaccctttgttcggaggcttcttggtaaagctttagaatttg |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
39856171 |
ctatttgggctaataagcttatatttgggttaaaaatcatatcagatttatccaaattaaccctttgtccggaggcttcttggtaaagctttagaatttg |
39856270 |
T |
|
| Q |
380 |
catgataacagtcacctcttcaggtttagccccacaaaaaaggatgctatcatcagcataccaaagatgagtaatttcaggggcatttgtagctatagaa |
479 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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|
| T |
39856271 |
catgataacagtcacctcttcaggtttagccctacaaaaaaggatgctatcatcagcatacaaaagatgagtaatttcaggggcatttgtagctatagaa |
39856370 |
T |
|
| Q |
480 |
atgccatgaa |
489 |
Q |
| |
|
|||||||||| |
|
|
| T |
39856371 |
atgccatgaa |
39856380 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 396 - 487
Target Start/End: Original strand, 23860431 - 23860522
Alignment:
| Q |
396 |
tcttcaggtttagccccacaaaaaaggatgctatcatcagcataccaaagatgagtaatttcaggggcatttgtagctatagaaatgccatg |
487 |
Q |
| |
|
||||||||||| |||| ||||||||||||||| ||||||||||| |||||||| ||| |||| ||||| || |||||||| || ||||| |
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|
| T |
23860431 |
tcttcaggttttgccctacaaaaaaggatgctgtcatcagcataaagaagatgagaaatagcaggagcattggtggctatagagataccatg |
23860522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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