View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18792_high_3 (Length: 266)
Name: NF18792_high_3
Description: NF18792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18792_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 9)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 254
Target Start/End: Complemental strand, 5426345 - 5426092
Alignment:
| Q |
1 |
ggactaatgtatacattattattattgacaagccatcagacacaagctactcataattcacgatgagagcacacataaccttttttcttttcttgatacc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
5426345 |
ggactaatgtatacattattattattgacaagccattagacacaagctactcataattcacgatgagagcacacttaacctttttgcttttcttgatacc |
5426246 |
T |
|
| Q |
101 |
attcagcttaatcaattccagctcaaatannnnnnnggtcaatggctactgtcaaggccatgaacgttctttgttgctccatttgaaaaacagcctgata |
200 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5426245 |
attcagcttaatcaattccagctcaaatatttttttggtcaatggctactgtcaaggccatgaacgttctttgttgctccatttgaaaaacagcctgata |
5426146 |
T |
|
| Q |
201 |
ttcaaccccgcaaaatcttcaaagctagttaattggaaccaaaatgatgatgat |
254 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5426145 |
ttcaaccccgcaaaatcttcaaagctagttaattggaaccaaaatgatgatgat |
5426092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 5399049 - 5399285
Alignment:
| Q |
18 |
attattattgacaagccatcagacacaagctactcataattcacgatgagagcacacataaccttttttcttttcttgataccattcagcttaatcaatt |
117 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
5399049 |
attattattgacaagccattagacacaagctactcataattcactatgagagcacacataacctttttgcttttcttgataccattcagcttaatcaatt |
5399148 |
T |
|
| Q |
118 |
ccagctcaaatannnnnnnggtcaatggctactgtcaaggccatgaacgttctttgttgctccatttgaaaaacagcctgatattcaaccccgcaaaatc |
217 |
Q |
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||| |||||||| ||| |||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||||| |
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| T |
5399149 |
ccaactcaaataattttttggttaatggctactgtcatggccatgaacgttctttgttgctccttttgaaaaacagtttgatattcaaccccaaaaaatc |
5399248 |
T |
|
| Q |
218 |
ttcaaagctagttaattggaaccaaaatgatgatgat |
254 |
Q |
| |
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||||||||||||| | |||||||||| |||||||||| |
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| T |
5399249 |
ttcaaagctagttcaatggaaccaaattgatgatgat |
5399285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 29 - 254
Target Start/End: Original strand, 5410176 - 5410401
Alignment:
| Q |
29 |
caagccatcagacacaagctactcataattcacgatgagagcacacataaccttttttcttttcttgataccattcagcttaatcaattccagctcaaat |
128 |
Q |
| |
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|||||||| ||| ||| ||||||||||||||| ||||||||||||||| |||||| |||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
5410176 |
caagccattagatacagcctactcataattcactatgagagcacacatagtctttttgcttttctttataccattcagcttaatcatttccagctcaaat |
5410275 |
T |
|
| Q |
129 |
annnnnnnggtcaatggctactgtcaaggccatgaacgttctttgttgctccatttgaaaaacagcctgatattcaaccccgcaaaatcttcaaagctag |
228 |
Q |
| |
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| |||||||||||||||||| |||||||||| ||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||||||| |
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| T |
5410276 |
aagtttttggtcaatggctactgtcatggccatgaacattctttgttgctccaattgaaaaacagtctgatattcaaccccacaaaatcttcaaagctag |
5410375 |
T |
|
| Q |
229 |
ttaattggaaccaaaatgatgatgat |
254 |
Q |
| |
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|| |||||||||||| |||||||||| |
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| T |
5410376 |
ttcattggaaccaaagtgatgatgat |
5410401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 29 - 243
Target Start/End: Original strand, 5390730 - 5390944
Alignment:
| Q |
29 |
caagccatcagacacaagctactcataattcacgatgagagcacacataaccttttttcttttcttgataccattcagcttaatcaattccagctcaaat |
128 |
Q |
| |
|
|||||||| ||||||| |||||||||| ||||| |||| |||||| |||| ||||| |||||||| |||||||||||| |||| |||||||| || || |
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| T |
5390730 |
caagccattagacacaggctactcatacttcactatgatagcacatataatcttttggcttttcttaataccattcagcataataaattccagttctaac |
5390829 |
T |
|
| Q |
129 |
annnnnnnggtcaatggctactgtcaaggccatgaacgttctttgttgctccatttgaaaaacagcctgatattcaaccccgcaaaatcttcaaagctag |
228 |
Q |
| |
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| ||| |||||||||||||| |||||| ||||||| ||||||||||| |||||||||| ||||||||||||| ||| || |||||||||||||| |
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| T |
5390830 |
aattttgtggtgaatggctactgtcatggccatcaacgttccttgttgctccaattgaaaaacaacctgatattcaactccgaaatatcttcaaagctag |
5390929 |
T |
|
| Q |
229 |
ttaattggaaccaaa |
243 |
Q |
| |
|
|| ||||||| |||| |
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| T |
5390930 |
ttcattggaagcaaa |
5390944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 50 - 243
Target Start/End: Original strand, 5499951 - 5500144
Alignment:
| Q |
50 |
ctcataattcacgatgagagcacacataaccttttttcttttcttgataccattcagcttaatcaattccagctcaaatannnnnnnggtcaatggctac |
149 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||| || ||||||||||||||| ||||||| ||||| ||| | || | ||| ||||||||| |
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| T |
5499951 |
ctcataattcactatgagagcattcataatattttggctgttcttgataccattctgcttaataaattcaagcactaacaattttgtggtgaatggctac |
5500050 |
T |
|
| Q |
150 |
tgtcaaggccatgaacgttctttgttgctccatttgaaaaacagcctgatattcaaccccgcaaaatcttcaaagctagttaattggaaccaaa |
243 |
Q |
| |
|
|||| |||||||||||||| ||||||||||| |||||||||| ||| |||||||||||| ||||||| |||||| ||||| |||||||||||| |
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| T |
5500051 |
tgtcttggccatgaacgttccttgttgctccaattgaaaaacaacctaatattcaaccccacaaaatcctcaaagttagttcattggaaccaaa |
5500144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 51 - 243
Target Start/End: Original strand, 5352086 - 5352278
Alignment:
| Q |
51 |
tcataattcacgatgagagcacacataaccttttttcttttcttgataccattcagcttaatcaattccagctcaaatannnnnnnggtcaatggctact |
150 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||| |||||||| ||||||||| ||||||| ||||||||||| | | || || ||||||| |
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|
| T |
5352086 |
tcataattcactatgaaagcacacataatcttttggcttttctttataccattctgcttaataaattccagctctcacaattttgttgtgaaaggctact |
5352185 |
T |
|
| Q |
151 |
gtcaaggccatgaacgttctttgttgctccatttgaaaaacagcctgatattcaaccccgcaaaatcttcaaagctagttaattggaaccaaa |
243 |
Q |
| |
|
||| |||||| ||||||| ||||||||||| |||||||||| ||| ||||||||||||| |||||||||||| ||||| ||||||| |||| |
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| T |
5352186 |
gtcttggccatcaacgttcgttgttgctccaattgaaaaacaaccttatattcaaccccgaaaaatcttcaaaactagtgcattggaatcaaa |
5352278 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 51 - 243
Target Start/End: Original strand, 5376432 - 5376624
Alignment:
| Q |
51 |
tcataattcacgatgagagcacacataaccttttttcttttcttgataccattcagcttaatcaattccagctcaaatannnnnnnggtcaatggctact |
150 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||| |||||||| || | |||||||| || ||||||||| | |||| | | |||||| ||| |
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| T |
5376432 |
tcataattcactatgagagcacatataattttttggcttttctttatgctattcagctccataaattccagcactaataattttttgctgaatggcaact |
5376531 |
T |
|
| Q |
151 |
gtcaaggccatgaacgttctttgttgctccatttgaaaaacagcctgatattcaaccccgcaaaatcttcaaagctagttaattggaaccaaa |
243 |
Q |
| |
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||| ||||||| ||||| | ||||||||||| ||||| |||| | ||||||||||||| | ||||||||||||||||||| |||||||||||| |
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| T |
5376532 |
gtctaggccatcaacgtgccttgttgctccaattgaagaacaacttgatattcaaccctgaaaaatcttcaaagctagttcattggaaccaaa |
5376624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 158 - 254
Target Start/End: Complemental strand, 5348868 - 5348772
Alignment:
| Q |
158 |
ccatgaacgttctttgttgctccatttgaaaaacagcctgatattcaaccccgcaaaatcttcaaagctagttaattggaaccaaaatgatgatgat |
254 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||| ||| | ||||||| |||| || ||||||||| || ||||||||||| |||||||||| |
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| T |
5348868 |
ccatgaacgttccttgttgctccatttgaaaaacaacctcactttcaaccttacaaactcctcaaagctatttcattggaaccaaggtgatgatgat |
5348772 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 52 - 121
Target Start/End: Complemental strand, 5348956 - 5348887
Alignment:
| Q |
52 |
cataattcacgatgagagcacacataaccttttttcttttcttgataccattcagcttaatcaattccag |
121 |
Q |
| |
|
|||||||||| ||||||| |||||||| | ||| ||||||| ||||||||||| ||||||||||||| |
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|
| T |
5348956 |
cataattcactatgagagtacacataatcctttggattttctttataccattcagaataatcaattccag |
5348887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 51 - 243
Target Start/End: Original strand, 20326617 - 20326809
Alignment:
| Q |
51 |
tcataattcacgatgagagcacacataaccttttttcttttcttgataccattcagcttaatcaattccagctcaaatannnnnnnggtcaatggctact |
150 |
Q |
| |
|
||||||||||| ||||||||||| |||| |||| |||||||| || | |||||||| || ||||||||| | |||| | | |||||| ||| |
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| T |
20326617 |
tcataattcactatgagagcacatataattttttggcttttctttatgctattcagctccataaattccagcactaataattttttgctgaatggcaact |
20326716 |
T |
|
| Q |
151 |
gtcaaggccatgaacgttctttgttgctccatttgaaaaacagcctgatattcaaccccgcaaaatcttcaaagctagttaattggaaccaaa |
243 |
Q |
| |
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||| ||||||| ||||| | |||||||||| ||||| |||| | ||||||||||||| | ||||||||||||||||||| |||||||||||| |
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| T |
20326717 |
gtcgaggccatcaacgtgccgtgttgctccaattgaagaacaacttgatattcaaccctgaaaaatcttcaaagctagttcattggaaccaaa |
20326809 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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