View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18792_high_5 (Length: 221)
Name: NF18792_high_5
Description: NF18792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18792_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 165; Significance: 2e-88; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 184
Target Start/End: Complemental strand, 12843609 - 12843425
Alignment:
| Q |
1 |
ttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12843609 |
ttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaa |
12843510 |
T |
|
| Q |
101 |
gattcaagattatagtgttaatgtctactgttaagatcgattaataactcttatgttcgtaactca-tttagagattatagtgtt |
184 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | |||||||||| ||||||| |||||||||||||||||| |
|
|
| T |
12843509 |
gattcaagattatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtt |
12843425 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 7e-73
Query Start/End: Original strand, 1 - 202
Target Start/End: Original strand, 12861872 - 12862074
Alignment:
| Q |
1 |
ttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtaccgttaagattgattttacattgtaaatttcaatcaa |
100 |
Q |
| |
|
||||||||||||||||||||||| ||| ||| |||||||||| | | |||||||||||||||| ||||||| |||||||| || |||||||||||||| |
|
|
| T |
12861872 |
ttatgcgtccattgatgcttattttgcgtttcttatcggaatttgtttccaagcttggaggtacccttaagatcgattttactttctaaatttcaatcaa |
12861971 |
T |
|
| Q |
101 |
gattcaagattatagtgttaatgtctactgttaagatcgattaataactcttatgttcgtaactca-tttagagattatagtgttgttgagtattgcact |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||| |
|
|
| T |
12861972 |
gattcaagattatagtgttaatgtctactgttaagatcgattaatcactcttatgttcgtaactcattttagagattatagtgttattgagtattgcact |
12862071 |
T |
|
| Q |
200 |
tat |
202 |
Q |
| |
|
||| |
|
|
| T |
12862072 |
tat |
12862074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 111 - 202
Target Start/End: Complemental strand, 13125837 - 13125745
Alignment:
| Q |
111 |
tatagtgttaatgtctactgttaagatcgattaataactcttatgttcgtaactca-tttagagattatagtgttgttgagtattgcacttat |
202 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
13125837 |
tatagtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgttgttgaatattgcacttat |
13125745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 129
Target Start/End: Complemental strand, 13125629 - 13125589
Alignment:
| Q |
89 |
aatttcaatcaagattcaagattatagtgttaatgtctact |
129 |
Q |
| |
|
|||||| ||||||||||||||| |||||||||||||||||| |
|
|
| T |
13125629 |
aatttctatcaagattcaagatcatagtgttaatgtctact |
13125589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University