View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18792_low_3 (Length: 523)
Name: NF18792_low_3
Description: NF18792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18792_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 1 - 507
Target Start/End: Original strand, 41544907 - 41545413
Alignment:
| Q |
1 |
catcaattaatcatgatgttatcatttaaaaccaactttaatgtcatgtcgactgacatagagatttagtttctcactttaaataactaaaatgttgtct |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41544907 |
catcaattaatcatgatgtcatcatttaaaaccaactttaatgtcatgtcgactaacatagagatttagtttctcactttaaataactaaaatgttgtct |
41545006 |
T |
|
| Q |
101 |
ttatggcctaaactatttctttaaacaaaatcacaaacacagatgatatgaaaaataatgactctctagttctagattgtgacattttttgggtttcaaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
41545007 |
ttatggcctaaactatttctttaaacaaaatcacaaacacagatgatatgaaaaataatgactctctagttctagattgtgacattttttgggtttaaaa |
41545106 |
T |
|
| Q |
201 |
tttcaaaccagccaccataatccatcttatcatatacttcacaaattggatttaagaaccaacagtatacaagaagaaagactaaacgtacagagaattc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41545107 |
tttcaaaccagccaccataatccatcttatcatatacttcacaaattggatttaagaaccaacagtatacaagaagaaagactaaacgtacagagaattc |
41545206 |
T |
|
| Q |
301 |
atgaaaagcattgcaatatacgtttgctagatccatttggcatcacaataattggttgtgttcaaatctggcacatggagcataacttaaactagctact |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41545207 |
atgaaaagcattgcaatatacgtttgctagatccatttggcatcacaataattggttgtgttcaaatctggcacatggagcataacttaaactagctact |
41545306 |
T |
|
| Q |
401 |
tcgagtgtgtatgcattttcagcacagtgctatgtgtccactcacactaccttttatccacattgccttgaagtaactcctaagacacaatcaatgaatt |
500 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
41545307 |
tcgagtgtgtatgcattttcagcacagtgctatgtgtccactcacactaccttttatccacattgccttgaagtaactcctaagacacactcaatgaatt |
41545406 |
T |
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| Q |
501 |
accaaaa |
507 |
Q |
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||||||| |
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| T |
41545407 |
accaaaa |
41545413 |
T |
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