View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18792_low_4 (Length: 475)
Name: NF18792_low_4
Description: NF18792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18792_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 416; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 8 - 464
Target Start/End: Complemental strand, 2948421 - 2947965
Alignment:
| Q |
8 |
agcagcagagacggtaaaattatcaaactttaaactattctttcattcctctgcaattttaaccttcttccattccttgtctaaagtctaaacctttctt |
107 |
Q |
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|||| |||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2948421 |
agcaacagaaacggtaaaattatcaaactttacactattctttcattcctctgcaattttaaccttcttccattccttgtctaaagtctaaacctttctt |
2948322 |
T |
|
| Q |
108 |
tcctatatattatcattcagatgatatttgatttgactgcnnnnnnnctcatcagttatgatccaaccgagtcctccgagaatttaagggagaactttgt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2948321 |
tcctatatattatcattcagatgatatttgatttgactgcaaaaaaactcatcagttatgatccaaccgagtcctccgagaatttaagggagaactttgt |
2948222 |
T |
|
| Q |
208 |
tgcatttatacaaggactcatctcattccctctcaacattccaggaacagcttataacaaatgtttgcaggtaagcattttattaatatgggtaatttag |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2948221 |
tgcatttatacaaggactcatctcattccctctcaacattccaggaacagcttataacaaatgtttgcaggtaagcattttattaatatgggtaatttag |
2948122 |
T |
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| Q |
308 |
taaacgaaactcgtttaattataaaaattagtacactcgtgataactttaaacgacagttaatttgagacagagaaagtatcagacaaagtgtagtattt |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2948121 |
taaacgaaactcgtttaattataaaaattagtacactcgtgataactttaaacgacagttaatttgagacagagaaagtatcagacaaagtgtagtatct |
2948022 |
T |
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| Q |
408 |
tgattttgattgagaaaacagaaatattaatttgttttggcttctcagggtagaaaa |
464 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2948021 |
tgattttgattgagaaaacagcaatattaatttgttttggcttctcagggtagaaaa |
2947965 |
T |
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