View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18792_low_5 (Length: 431)
Name: NF18792_low_5
Description: NF18792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18792_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 141 - 413
Target Start/End: Original strand, 46236108 - 46236380
Alignment:
| Q |
141 |
cgtagttttcacaacatctttctttgcttttagggtaagcgttcagtatcagatcacataggtgaggctgcaaattatgtacaaattttgaagcagaaaa |
240 |
Q |
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| T |
46236108 |
cgtagttttcacaacatctttctttgcttttagggtaagcgttcagtatcagatcacataggtgaggctgcaaattatgtacaaattttgaagcagaaaa |
46236207 |
T |
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| Q |
241 |
ttaatgaacttgaaataaagagagataagatgaaagaaatggttagttcaagtagggttgaaactggaaatgaattatcagcagatccttcaagtgtagt |
340 |
Q |
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| T |
46236208 |
ttaatgaacttgaaataaagagagataaaatgaaagaaatggttagttcaagtagggttgaaactggaaatgaattatcagcagatccttcaagtgtagt |
46236307 |
T |
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| Q |
341 |
gaagtgtgtcaagattgatctaattccaggaggggtggaaattgttatatgtagtggtttcgaggattatagt |
413 |
Q |
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| T |
46236308 |
gaagtgtgtcaagattgatctaattccaggaggggtggaaattgttatatgtagtggtctcgaggattatagt |
46236380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 46235969 - 46236027
Alignment:
| Q |
1 |
aaatgtctattctatgttcatcactccgttcttcaattccttttgatctcatcaaggtc |
59 |
Q |
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| T |
46235969 |
aaatgtctattctatgttcatcactccgttcttcacttccttttgatctcatcaaggtc |
46236027 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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