View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18792_low_7 (Length: 263)
Name: NF18792_low_7
Description: NF18792
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18792_low_7 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 34689728 - 34689469
Alignment:
| Q |
18 |
tcaacaatatcttcaatcatttcctaatgtacatcactacattcttgcaattaaattatcaaacaaattaaaaattatctaacatattcattt------- |
110 |
Q |
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| T |
34689728 |
tcaacaatatcttcaatcatttcctaatgtacatcactacattcttgcaattaaattatcaaacaaattaaaaattatctaacatattcattttacagtg |
34689629 |
T |
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| Q |
111 |
--------catatgatatttatttattagctaacaaatctaaaattcttgcaattaaattatctgataattcgtagtgtttcagggattgtaggcagctc |
202 |
Q |
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| T |
34689628 |
tttcatttcatatgataattatttattagctaacaaatctaaaattcttgcgattaaattatttg-taattcgtagtgtttcagggattgtaggcagctc |
34689530 |
T |
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| Q |
203 |
ataaagtgcaccactacatttctttccatgcttttaacaaattctgaatatttgaatccac |
263 |
Q |
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| T |
34689529 |
ataaagtgcaccactacatttctttccatgcttttaacaaattctgaatatttgaatccac |
34689469 |
T |
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