View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_high_12 (Length: 479)
Name: NF18793_high_12
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_high_12 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 233 - 473
Target Start/End: Original strand, 13146273 - 13146513
Alignment:
| Q |
233 |
ttttaactaaaattaaaatgtgttcacccccttaatccgggtcttagttacactaatacaaatatcaaaatatttgttagcactaccttcaccaacatca |
332 |
Q |
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| T |
13146273 |
ttttaactaaaattaaaatgtgttcacccccttaatccgggtcttagttacactaagacaaacatcaaaatatttgttagcaccaccttcaccaacatca |
13146372 |
T |
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| Q |
333 |
aaactaaaaatatcaggtaattcccccttcgatttaatcccttcaagcatcgacacaacttttctcattgaaggtctatcagctggatttctgcttgtgc |
432 |
Q |
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| T |
13146373 |
aaactaaaaatatcaggtaattcccccttcgatttaatcccttcaaggatcgacacagcttttctcattgaaggtctatcagctggatttctgcttgtgc |
13146472 |
T |
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| Q |
433 |
aaagcaatgcaattctgagcatttgtaccatttcttctctc |
473 |
Q |
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| T |
13146473 |
aaagcaatgcaattctgagcatttgtaccatttcttctctc |
13146513 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 15 - 109
Target Start/End: Original strand, 13145929 - 13146023
Alignment:
| Q |
15 |
cagatgaattactaagttgtgtagagaaacggaagtattcttcaaaagtgtatatagcataatattggagagcaatatggtcctaaggatgggtt |
109 |
Q |
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| T |
13145929 |
cagatgaattactaagttgtatagagaaacggaaatattcttcaaaagtgtatatagcataatattgtagagcaatatggtcctaaggatgggtt |
13146023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 377 - 469
Target Start/End: Complemental strand, 13227978 - 13227886
Alignment:
| Q |
377 |
aagcatcgacacaacttttctcattgaaggtctatcagctggatttctgcttgtgcaaagcaatgcaattctgagcatttgtaccatttcttc |
469 |
Q |
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| T |
13227978 |
aagcatcaacacaacatctctcattgaaggtctatcagctggatttctacttgtgcaaagcaatgcaattctaagcatttgtttcatttcttc |
13227886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 395 - 454
Target Start/End: Original strand, 13313660 - 13313719
Alignment:
| Q |
395 |
tctcattgaaggtctatcagctggatttctgcttgtgcaaagcaatgcaattctgagcat |
454 |
Q |
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| T |
13313660 |
tctcattgaaggcctattggctctatgtctgcttgtgcaaagcaatgcaattctaagcat |
13313719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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