View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_high_15 (Length: 384)
Name: NF18793_high_15
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_high_15 |
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Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 346
Target Start/End: Complemental strand, 33262674 - 33262348
Alignment:
| Q |
18 |
ttttttacacgatcaattaattaaaatatttgacttttatcataagtatctctaaagtcacacgtatgattgattgtgtttgttgacagaaaaaattata |
117 |
Q |
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| T |
33262674 |
ttttttacacgatcaattaattaaaatatttgacttttatcataactatctctaaagtcacacatatgattgattgtgtttgttgacagaaaaaactata |
33262575 |
T |
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| Q |
118 |
tatctcataatatatcaaaattaaactcaattaataaaagatgatgcctaagatacctttaaaaaattgtgggtataatttacctaacaactaatcaaaa |
217 |
Q |
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| T |
33262574 |
tatctcataatatatcaaaattaaactcaatcaataaaa-atgatacctaagatacctttgaaaaattgtgggtataatttacgtaacaactaatcaaaa |
33262476 |
T |
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| Q |
218 |
tttgccacataagtaaatttgcattaggtaccaaaaaactaactttcacttcacttaaaaatatacttatatgactaattttaattaatttataggtaaa |
317 |
Q |
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| T |
33262475 |
tttgccacataagtaaatttgca-tgggtaccaaaaaactaactttcacttcacttaaaaatatacttatatgactaattttaattggtttataggtaaa |
33262377 |
T |
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| Q |
318 |
ttactcgtaattcttcaaagataaactag |
346 |
Q |
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| T |
33262376 |
ttactcgtaattcttcaaagataacctag |
33262348 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 205 - 273
Target Start/End: Complemental strand, 7610394 - 7610326
Alignment:
| Q |
205 |
caactaatcaaaatttgccacataagtaaatttgcattaggtaccaaaaaactaactttcacttcactt |
273 |
Q |
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| T |
7610394 |
caaccaatcacaattagcaacataagtaaattagcatgtggtacccacaaactaactttcacatcactt |
7610326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 94
Target Start/End: Complemental strand, 10231911 - 10231853
Alignment:
| Q |
37 |
attaaaat-atttgacttttatcataagtatctctaaagtcacacgtatgattgattgt |
94 |
Q |
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| T |
10231911 |
attaaaatcatttgacttttatcataactatttctaaaatcacacatatgattgattgt |
10231853 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 93
Target Start/End: Complemental strand, 5747799 - 5747747
Alignment:
| Q |
41 |
aaatatttgacttttatcataagtatctctaaagtcacacgtatgattgattg |
93 |
Q |
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| T |
5747799 |
aaatatttgactttaatcataactatgtctatagccacacatatgattgattg |
5747747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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