View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18793_high_17 (Length: 358)
Name: NF18793_high_17
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_high_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 175; Significance: 4e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 82 - 342
Target Start/End: Original strand, 34227320 - 34227583
Alignment:
| Q |
82 |
ttgcttgaccactggttcaatgttagcgagcaaaatatcttctttaagtacatgaactgtgcacttgaagatga----tatcaagaaagttgttggtata |
177 |
Q |
| |
|
||||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
34227320 |
ttgcttgactactggttcaatgttagtgagccgaatatcttctttaagtacatgaactgtgcacttgaagatgaatgatatcaagaaagttgttggtata |
34227419 |
T |
|
| Q |
178 |
aggtatctgcttctgtcgagcttctatgctcatcacacatcttcatcacttaattggccaaannnnnnncatttggaacatagtgtgaagttatttattc |
277 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||| |||||||||||| ||||| ||||||||| ||||||||||||||||||||| |
|
|
| T |
34227420 |
aggtatctgcttctgtcaagcttctatgcttatcacacatctgcatcacttaatt-cccaaaaaattttcatttggaatatagtgtgaagttatttattc |
34227518 |
T |
|
| Q |
278 |
tctcttgtcactgattcatcattctattttaagtacttaacacttttgttttgtgtctcacaagt |
342 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34227519 |
tctcttgtcaccaattcatcattctattttaagtacttaacacttttgttttgtgtctcacaagt |
34227583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 3 - 81
Target Start/End: Original strand, 34227209 - 34227292
Alignment:
| Q |
3 |
gaaattctgcgacgtaattagtttctggtatccggattag-----tatttttcacatcagctatgcagacaatgacactagttt |
81 |
Q |
| |
|
||||||||| ||| |||||||||||||||||||||||||| | |||||||||||| |||||||||||| ||||||||||| |
|
|
| T |
34227209 |
gaaattctgagacataattagtttctggtatccggattagttttttttttttcacatcaactatgcagacaacgacactagttt |
34227292 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 127 - 204
Target Start/End: Complemental strand, 2755471 - 2755394
Alignment:
| Q |
127 |
aagtacatgaactgtgcacttgaagatgatatcaagaaagttgttggtataaggtatctgcttctgtcgagcttctat |
204 |
Q |
| |
|
|||||||||||| |||| |||||||||||| ||||||||||||| ||||| |||||| |||||| || || |||||| |
|
|
| T |
2755471 |
aagtacatgaaccgtgcgcttgaagatgatttcaagaaagttgtcggtattaggtatgcgcttctatcaagtttctat |
2755394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University