View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_high_20 (Length: 310)
Name: NF18793_high_20
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_high_20 |
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| [»] chr4 (5 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 126; Significance: 5e-65; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 177 - 310
Target Start/End: Complemental strand, 30720247 - 30720114
Alignment:
| Q |
177 |
tcatatgtgctcctcaatcacaaagacaagtagttttaagtatgaaaatgcaagtgttccatcaacagtggattggtgaaagaaaggagcagtaacacca |
276 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30720247 |
tcatatgtgctcctcaatcacaaagacaagtacttttaagtatgaaaatgcaagtgttccatcaacagtggattggagaaagaaaggagcagtaacacca |
30720148 |
T |
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| Q |
277 |
gtgaagaaccaaggtcaatgtggtaagtgtctat |
310 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30720147 |
gtgaagaaccaaggtcaatgtggtaagtgtctat |
30720114 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 177 - 310
Target Start/End: Original strand, 30881112 - 30881245
Alignment:
| Q |
177 |
tcatatgtgctcctcaatcacaaagacaagtagttttaagtatgaaaatgcaagtgttccatcaacagtggattggtgaaagaaaggagcagtaacacca |
276 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
30881112 |
tcatatgtgctcctcaatcacaaagacaagtacttttaagtatgaaaatgcaagtgttccatcaacagtggattggagaaagaaaggagcagtaacacca |
30881211 |
T |
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| Q |
277 |
gtgaagaaccaaggtcaatgtggtaagtgtctat |
310 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30881212 |
gtgaagaaccaaggtcaatgtggtaagtgtctat |
30881245 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 177 - 310
Target Start/End: Original strand, 30892195 - 30892328
Alignment:
| Q |
177 |
tcatatgtgctcctcaatcacaaagacaagtagttttaagtatgaaaatgcaagtgttccatcaacagtggattggtgaaagaaaggagcagtaacacca |
276 |
Q |
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| T |
30892195 |
tcatatgtgctcctcaatcacaaagacaagtacttttaagtatgaaaatgcaagtgttccatcaacagtggattggagaaagaaaggagcagtaacacca |
30892294 |
T |
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| Q |
277 |
gtgaagaaccaaggtcaatgtggtaagtgtctat |
310 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
30892295 |
gtgaagaaccaaggtcaatgtggtaagtgtctat |
30892328 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 178 - 306
Target Start/End: Complemental strand, 16868058 - 16867927
Alignment:
| Q |
178 |
catatgtgctcctcaatcacaaagacaagtagttttaagtatgaaaatgcaagtg---ttccatcaacagtggattggtgaaagaaaggagcagtaacac |
274 |
Q |
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||||||||||| |||||||||| |||||||| ||||||||||||||||||||||| ||||||| | ||||||||| | |||||||||||||| |||| |
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| T |
16868058 |
catatgtgctcttcaatcacaaggacaagtacttttaagtatgaaaatgcaagtgcaattccatcctcggtggattggaggaagaaaggagcagttacac |
16867959 |
T |
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| Q |
275 |
cagtgaagaaccaaggtcaatgtggtaagtgt |
306 |
Q |
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| T |
16867958 |
ctgtgaagaaccaaggacaatgtggtacgtgt |
16867927 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 177 - 304
Target Start/End: Complemental strand, 44731685 - 44731555
Alignment:
| Q |
177 |
tcatatgtgctcctcaatcacaaagacaagtagttttaagtatgaaaatgcaagtg---ttccatcaacagtggattggtgaaagaaaggagcagtaaca |
273 |
Q |
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||||||||||||||||||| | || |||| || ||||||||||||||||| ||||| | || || |||||||||||| | |||||||||||||| ||| |
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| T |
44731685 |
tcatatgtgctcctcaatcgcgaaaacaactacttttaagtatgaaaatgtaagtgcaatcccgtccacagtggattggaggaagaaaggagcagtgaca |
44731586 |
T |
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| Q |
274 |
ccagtgaagaaccaaggtcaatgtggtaagt |
304 |
Q |
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| T |
44731585 |
cctgtgaagaaccaaggtcaatgtggtaagt |
44731555 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 9 - 139
Target Start/End: Complemental strand, 15998218 - 15998089
Alignment:
| Q |
9 |
gaagaatataaatttggaaaatgtgaggaacatagagaaggaacgagagtggagtagcaaaggggaagggaaaatgaatgaagaaaatatgtggtagttt |
108 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||| ||||| ||||||||||||||||||||||||| ||||||||||||| || |
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| T |
15998218 |
gaagaatataaatttggaaaatgtgaggaacagagagaaggaatgagagcaaagtag-aaaggggaagggaaaatgaatgaaggaaatatgtggtagctt |
15998120 |
T |
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| Q |
109 |
ctagaccgtgcttgtattttatcattatttt |
139 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
15998119 |
ctagaccgtgcttgtattttatcattatttt |
15998089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 21 - 139
Target Start/End: Original strand, 6111119 - 6111235
Alignment:
| Q |
21 |
tttggaaaatgtgaggaacatagagaaggaacgagagtggagtagcaaaggggaagggaaaatgaatgaagaaaatatgtggtagtttctagaccgtgct |
120 |
Q |
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||||| |||| ||||||||| |||||||||||||||||| ||||| || ||||||||||||||||||||| ||||||||| ||| |||||||||||| | |
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| T |
6111119 |
tttgggaaatatgaggaacagagagaaggaacgagagtgaagtag--aatgggaagggaaaatgaatgaaggaaatatgtgctagcttctagaccgtgtt |
6111216 |
T |
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| Q |
121 |
tgtattttatcattatttt |
139 |
Q |
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||| ||||||||||||||| |
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| T |
6111217 |
tgtgttttatcattatttt |
6111235 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 178 - 310
Target Start/End: Original strand, 8898731 - 8898866
Alignment:
| Q |
178 |
catatgtgctcctcaatcacaaagacaagtagttttaagtatgaaaatgcaagtg---ttccatcaacagtggattggtgaaagaaaggagcagtaacac |
274 |
Q |
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||||||||||| ||||||| || ||||| || ||||||||||||||||| ||||| | ||||| |||||||||||| | |||||||||||||| |||| |
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| T |
8898731 |
catatgtgctcatcaatcataaggacaactacttttaagtatgaaaatgtaagtgcaatcccatctacagtggattggaggaagaaaggagcagtgacac |
8898830 |
T |
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| Q |
275 |
cagtgaagaaccaaggtcaatgtggtaagtgtctat |
310 |
Q |
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| |||||||||||||| |||||||||| || ||||| |
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| T |
8898831 |
ctgtgaagaaccaaggccaatgtggtacgtttctat |
8898866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 308
Target Start/End: Original strand, 31726704 - 31726781
Alignment:
| Q |
231 |
tgttccatcaacagtggattggtgaaagaaaggagcagtaacaccagtgaagaaccaaggtcaatgtggtaagtgtct |
308 |
Q |
| |
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||||||||| ||||||||||| | || |||||||||| ||||| ||||| || ||||| ||||||||||||||||| |
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| T |
31726704 |
tgttccatctgcagtggattggaggcaggaaggagcagtgacacctgtgaaaaatcaaggccaatgtggtaagtgtct |
31726781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 242 - 304
Target Start/End: Original strand, 54277046 - 54277108
Alignment:
| Q |
242 |
cagtggattggtgaaagaaaggagcagtaacaccagtgaagaaccaaggtcaatgtggtaagt |
304 |
Q |
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| T |
54277046 |
cagttgattggagaaagaaaggtgctgtaaccccggtcaagaatcaaggtcaatgtggtaagt |
54277108 |
T |
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