View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_high_21 (Length: 299)
Name: NF18793_high_21
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_high_21 |
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Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-138; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 275
Target Start/End: Original strand, 30043845 - 30044120
Alignment:
| Q |
1 |
cttgatgttagttcgatcaatgacgaaattctgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaaatctttttgagtt |
100 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30043845 |
cttgatgttagttcgatcaatgacgagattttgttcaccctcaatatcaatggtttggtgcataattgaaagaagtatgtctacaaaatctttttgagtt |
30043944 |
T |
|
| Q |
101 |
ttgtttacattagcagcttgttcatgttctgttaatatcacctctagcacctcatcaagtgctttactgactttcttgcaagattttgtt-atccctaac |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
30043945 |
ttgtttacattagcagcttgttcatgttctgttaatatcacctctagcacctcatcaagtgctttactgactttcttgcaagattttgttaatccctaac |
30044044 |
T |
|
| Q |
200 |
aatgagttaaaacataaaatatcaattgctaaatgaatattttcattgtacttaacaaaaccattagagcatcctt |
275 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30044045 |
aatgagttaaaacataaaatatcaattactaaatgaatattttcattgtacttaacaaaaccattagagcatcctt |
30044120 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 270
Target Start/End: Complemental strand, 29995364 - 29995092
Alignment:
| Q |
1 |
cttgatgttagttcgatcaatgacgaaattctgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaaatcttt---ttga |
97 |
Q |
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|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
29995364 |
cttgatgttagttcgatcaatgacgagattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaaatctttatgatga |
29995265 |
T |
|
| Q |
98 |
gttttgtttacattagcagcttgttcatgttctgttaatatcacctctagcacctcatcaagtgctttactgactttcttgcaagattttgtt-atccct |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||||||||||| |||||| |
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| T |
29995264 |
gttttgtttacattagcagcttgttcatgttctgttaatatcacctctagctgctcatcaattgctttactaactttcttgcaagattttgttaatccct |
29995165 |
T |
|
| Q |
197 |
aacaatgagttaaaacataaaatatcaattgctaaatgaatattttcattgtacttaacaaaaccattagagca |
270 |
Q |
| |
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||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||| |
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| T |
29995164 |
aacaatgagtt-aaacataaaatatcaattactaaataaatattttcattgtacttaacaaaatcattagagca |
29995092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 2 - 271
Target Start/End: Original strand, 30068364 - 30068622
Alignment:
| Q |
2 |
ttgatgttagttcgatcaatgacgaaattctgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaaatcttt---ttgag |
98 |
Q |
| |
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|||||||||| ||||||||| |||| ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| |||| |
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| T |
30068364 |
ttgatgttagatcgatcaattacgagattttgttcaccctcgacatcaatggtttgatgcataattgaaagaagtatgtctacgaaatctttatgatgag |
30068463 |
T |
|
| Q |
99 |
ttttgtttacattagcagcttgttcatgttctgttaatatcacctctagcacctcatcaagtgctttactgactttcttgcaagattttgtt-atcccta |
197 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||| ||||| ||||||| |||| ||||||| |
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| T |
30068464 |
ttttgtttacattagcagcttgt--------------aatcacctctagcacctcatcaatttctttactgagtttctggcaagatcgtgttaatcccta |
30068549 |
T |
|
| Q |
198 |
acaatgagttaaaacataaaatatcaattgctaaatgaatattttcattgtacttaacaaaaccattagagcat |
271 |
Q |
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|||| ||||| |||| ||||||||||||| || || |||||| ||| ||||||||||| |||||||||||||| |
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| T |
30068550 |
acaaagagtt-aaacttaaaatatcaattattacatcaatattctcagtgtacttaacagaaccattagagcat |
30068622 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 30007153 - 30007062
Alignment:
| Q |
1 |
cttgatgttagttcgatcaatgacgaaattctgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaaatctt |
92 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
30007153 |
cttgatgttagttcgatcaatgacgagattttgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaagtctt |
30007062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 1 - 258
Target Start/End: Complemental strand, 30001037 - 30000784
Alignment:
| Q |
1 |
cttgatgttagttcgatcaatgacgaaattctgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaaatctttttgagtt |
100 |
Q |
| |
|
||||||| | |||||||||||||||| || ||| ||||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| || |
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| T |
30001037 |
cttgatgatcgttcgatcaatgacgagatcttgtccaccctcaacatcaatggtttggtgcataattgaaagaactgtgtctacaaaatcttt---agga |
30000941 |
T |
|
| Q |
101 |
ttgtttacattagcagcttgttcatgttctgttaatatcacctctagcacctcatcaagtgctttactgactttcttgcaagattttgtt-atccctaac |
199 |
Q |
| |
|
| || | ||||| || ||||||||| ||||||| ||||| ||| | || |||||||| ||||||||| ||| ||||||| || |||| ||||||| | |
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| T |
30000940 |
tcgtctgtattagtagtttgttcatgctctgttattatcatctccaaaacttcatcaagagctttactggtttttttgcaagcttgtgttaatccctatc |
30000841 |
T |
|
| Q |
200 |
aatgagttaaaacataaaatatcaattgctaaatgaatattttcattgtacttaacaaa |
258 |
Q |
| |
|
|| |||| ||| | ||||||| || ||| |||||||||||||||| |||||||||| |
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| T |
30000840 |
aaaaagtt--aactaataatatcagttactacatgaatattttcattgaacttaacaaa |
30000784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 50 - 168
Target Start/End: Complemental strand, 29946595 - 29946474
Alignment:
| Q |
50 |
atggtttggtgcataattgaaagaagtatgtctacaaaatct---ttttgagttttgtttacattagcagcttgttcatgttctgttaatatcacctcta |
146 |
Q |
| |
|
|||||||||| | ||||||| || ||||||||||| || ||| | |||||||||| |||||||| | ||||||||| ||||||| |||||| || | |
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| T |
29946595 |
atggtttggttcttaattgagagtagtatgtctacgaagtcttcatgatgagttttgtctacattagttgtttgttcatgctctgttattatcacttcca |
29946496 |
T |
|
| Q |
147 |
gcacctcatcaagtgctttact |
168 |
Q |
| |
|
||||||||||||||| |||||| |
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|
| T |
29946495 |
gcacctcatcaagtgatttact |
29946474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 167
Target Start/End: Complemental strand, 29953605 - 29953436
Alignment:
| Q |
1 |
cttgatgttagttcgatcaatgacgaaattctgttcaccctcgacatcaatggtttggtgcataattgaaagaagtatgtctacaaaatcttttt---ga |
97 |
Q |
| |
|
||||||||||||||||||||||| ||| | |||| || | |||||||||||||||||||| || |||||||||||| ||||| |||| | || |
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| T |
29953605 |
cttgatgttagttcgatcaatgaaatgattttcttcattttctagatcaatggtttggtgcataaatgtaagaagtatgtcaacaaagtcttcatggcga |
29953506 |
T |
|
| Q |
98 |
gttttgtttacattagcagcttgttcatgttctgttaatatcacctctagcacctcatcaagtgctttac |
167 |
Q |
| |
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|||||| |||||||| | ||||||||| |||||||| || || || | ||||||||||| |||||||| |
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|
| T |
29953505 |
tttttgtctacattagtggtttgttcatgctctgttaaaataacttccaacacctcatcaattgctttac |
29953436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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