View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_high_29 (Length: 237)
Name: NF18793_high_29
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_high_29 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 18 - 237
Target Start/End: Complemental strand, 52169697 - 52169476
Alignment:
| Q |
18 |
aaacatataacacacatgtatattaaaatgcccgagggaaaggaattggctggtttgat-caaaaacattacaaatagtacatcattgaatgg-tatgta |
115 |
Q |
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| T |
52169697 |
aaacatatatcacacatgtatattaaaatgccagagggaaaggaattggctggtttgatgcaaaaacattacgaatagtacatcattgaatgggtatgta |
52169598 |
T |
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| Q |
116 |
caaatagtataaaatggcaacacttaaacaattgtaggaaaacattgaaaatagaaaaagagtttaacttcaagtgtactacacattcactgcgacattt |
215 |
Q |
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| T |
52169597 |
caaatagtataaaatggcaacacttaaacacttgtaggaaaacattgaaaatagaaaaagagcttaacttcaagtgtaatacacattcactgcgacattt |
52169498 |
T |
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| Q |
216 |
tagcataaagatttctgctacg |
237 |
Q |
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|||||||||||||||||||||| |
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| T |
52169497 |
tagcataaagatttctgctacg |
52169476 |
T |
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