View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18793_high_9 (Length: 545)
Name: NF18793_high_9
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_high_9 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 14 - 508
Target Start/End: Original strand, 40568501 - 40568988
Alignment:
| Q |
14 |
atcataatacttctaggtaaattcattggttatgttacgacgagggagcatgtcaaggcgttatggaaactaactggtggttttgagattgtagatattg |
113 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40568501 |
atcataatatttctaggtaaattcattggttatgttacgacg--ggagcatgtcaaggcgttatggaaactaactggtggttttgagattgtagatattg |
40568598 |
T |
|
| Q |
114 |
gccatggatttttcatggtacagttcgatatagaggctgataaagaaaaagtgcttgaaggggggacttattttcaagctggcaccaataataacacggc |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40568599 |
gccatggatttttcatggtacagttcgatatagaggctgataaagaaaaagtgcttgaaggggggacttattttcaagctggcaccaataataacacggc |
40568698 |
T |
|
| Q |
214 |
acaaaaaatacggacaagaaacatccaaggagtgatattaacggtacaaattataagccacaagtagagacatacactaacatgggacatgtgataacta |
313 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40568699 |
acaaaaaatatggacaagaaacatccaaggagtgatattaacggtacaaattataagccacaagtagagacatacactaacatgggacatgtgataacta |
40568798 |
T |
|
| Q |
314 |
gccaaaaatgttaagtagccaggacatcagaagaatgacgagagtttggatgaagagagtgttaagatggtcgtggaaacacaacacctcttcataatgt |
413 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
40568799 |
gccaaaaatgttaagtagccatggcatcagaagaatgacgagagtttggatgaggagagtgttaagatggtcgtgga-----aacacctcttcataatgt |
40568893 |
T |
|
| Q |
414 |
atgtagtcttatttagttcatgaattgtgattgtaattcaatattgaaaacattgtcaatttcgaattcaatattaaaattgatgaatgcaatta |
508 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40568894 |
atgtagtcttatttagttcaagaattgtgattgtaattcaatattgaaaacattgtcaatttcgaattcaatattaaaattgatgaatgcaatta |
40568988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University