View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_low_1 (Length: 790)
Name: NF18793_low_1
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 18 - 620
Target Start/End: Original strand, 32736886 - 32737506
Alignment:
| Q |
18 |
tactactgtataatttattttaaaacattgtatgttcggtcaattgagtgtacataaattcaactcaacccccattcctcttgtcatgtggtaacccttt |
117 |
Q |
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| T |
32736886 |
tactactatataatttattttaaaacattgtatgttcggtcaattgagtgtacataaattcaactcaacccccattcctcttgtcatgtggtaacccttt |
32736985 |
T |
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| Q |
118 |
tttcatgtggtaacactgcaatgcccaactaggaaacattccatacttccaatggtgttgagctttcatctctaccactaagcaatcctctttcccactt |
217 |
Q |
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| T |
32736986 |
tttcatgtggtaacactgcaatgcccaactaggaaacattccatacttccaatggttttgagctttcatctctaccactaagcaaccctctttcccactt |
32737085 |
T |
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| Q |
218 |
gtctataattaggcgaatctctgcttcaaatctgattttattcacaatttgtaatataatagagaacatttattttatgccgatcaaaggaataaatttt |
317 |
Q |
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| T |
32737086 |
gtctataattaggcgaatctatgcttcaaatctgatttcattcacaatttgtaatataatagagaacatttattttatgccgatcaaaggaataaatttt |
32737185 |
T |
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| Q |
318 |
aatctcaattttttcaagtaaagttcacaagacaaaacattaaattatggaatcacattgataatccctatgaaggagtttatggtactacattacatac |
417 |
Q |
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| T |
32737186 |
aatctcaattttttcaagtaaagttcacaagacaaaacattaaattatggaatcacattgataatccctatgaagtagtttatggtactacattacatac |
32737285 |
T |
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| Q |
418 |
acacgagactacaaataatagtact-actagtgtctagtgctagaaaatatgtggattattataatttggaattagggtccaaaattttaaaagtgcaat |
516 |
Q |
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| T |
32737286 |
acacgagactacaaataatagtactaactagtgtcaagtgctagaaaatatgtggattattataatttggaattagggtccaaaattataaaagtgcaat |
32737385 |
T |
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| Q |
517 |
gcagaaatccgtaca----------ttgc-------aaagttgcttttttgtgggtttatacaatttacatatctatgacgtggcgttcaagggtacctc |
599 |
Q |
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| T |
32737386 |
gcagaaatccgtacattattgaactttgctacattgcaagttgcttttttgtgggtttatacaatttacatatctatgacgtggcgttcaagggtacctc |
32737485 |
T |
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| Q |
600 |
agcagaaggggcctcttcttc |
620 |
Q |
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| T |
32737486 |
agctgaaggggcctcttcttc |
32737506 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 671 - 765
Target Start/End: Original strand, 32737556 - 32737649
Alignment:
| Q |
671 |
gtctgtatgtactgcaatatgtcagtgcctgaccatgtctgtctcaatctctaaaaattgttggtttctttgttcgttgagttccaatattttca |
765 |
Q |
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| T |
32737556 |
gtctgtatgtactgcaatatgtcattgcctgaccatgtctgtcacaatctctaaaaa-tgttggtttctttgatcgttgagttccaatattttca |
32737649 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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