View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_low_14 (Length: 454)
Name: NF18793_low_14
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_low_14 |
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Alignment Details
Target: chr2 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 42 - 444
Target Start/End: Complemental strand, 36604401 - 36603999
Alignment:
| Q |
42 |
cctcaccttttgcaattatcacatatattcattgtcctactttccctttctgtctttaacaatatacattccccttaaagattgtatgttgctaaagaga |
141 |
Q |
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| T |
36604401 |
cctcaccttttgcaattatcacatatattcattgtcctactttccctttctgtctttaacaatatacattccccttaaagattgtttgttgctaaagaga |
36604302 |
T |
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| Q |
142 |
gacaatactaaaagctctgttccaaaattttgtttatactactagctatagcataactcctaccacatacccaacttcattccaaaatttacatggagcc |
241 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36604301 |
gacaatactaaaagctctgttccaaaattttgtttatactactagctatagcataactcctaccacatacccagcttcattccaaaatttacatggagcc |
36604202 |
T |
|
| Q |
242 |
tcagcctcctcataccagcaccaatgcttcttctaggacaccggggtcctctactctcggtgtagtccgtcgacttacctggacattcattttactcttt |
341 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36604201 |
tcagcctcctcataccagcaccaatgcttcttctaggacaccggggtcctctactctcggtgtagtccgtcgacttacctggacattcattttactcttt |
36604102 |
T |
|
| Q |
342 |
ctcactttaactgtcatcatcgctatagcttggaatgtcatggacccacataaacctcattttcgagtcagctcaatctctgtgtccaacttcactgtct |
441 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36604101 |
ctcactttaactgtcatcatcgctatagcttggaatgtcatggacccacataaaactcattttcgagtcagctcaatctctgtgtccaacttcactgtct |
36604002 |
T |
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| Q |
442 |
ctg |
444 |
Q |
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| T |
36604001 |
ctg |
36603999 |
T |
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