View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_low_17 (Length: 373)
Name: NF18793_low_17
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 21218858 - 21219221
Alignment:
| Q |
1 |
catgtccaagaatatatatcttcattggggtaacctgccttgcttcgcaacagtcaggaattatgagctctattcccttaggatccgctgagcacagaag |
100 |
Q |
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|||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21218858 |
catgtccaccaaaatatatcttcattggggtaacctgccttgcttcgcaacagtcaggaattatgagctctattcccttaggatccgctgagcacagaag |
21218957 |
T |
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| Q |
101 |
acaaaaaacaaataattacattagggatgtatattacaatgacacaaaatcttatagaatcgatacatacatacacacaaaacaataaataaaatgatcc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
21218958 |
acaaaaaacaaataattacattagggatgtatattacaatgacacaaaatcttatagaatcgatacatacatacacacagaacaataaataaaatgatcc |
21219057 |
T |
|
| Q |
201 |
attaaccaggatatatcagcacagctgacaaatcagtcaaacattgctgtatactaaaagatctcatcaaaagtacgatagtgtaatcagtgaatcaagt |
300 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21219058 |
attaaccaggatatatcagcacagttgacaaatcagtcaaacattgctgtatactaaaagatctcatcaaaagtacgatagtgtaatcagtgaatcaagt |
21219157 |
T |
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| Q |
301 |
actatagttgcacaaaacaactatttagtaaaatataatcaagattccaggagtatgatgatgt |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21219158 |
actatagttgcacaaaacaactatttagtaaaatataatcaagattccaggagtatgatgatgt |
21219221 |
T |
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