View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18793_low_19 (Length: 333)

Name: NF18793_low_19
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18793_low_19
NF18793_low_19
[»] chr2 (15 HSPs)
chr2 (58-333)||(8412200-8412475)
chr2 (58-333)||(8434298-8434573)
chr2 (56-333)||(8406078-8406355)
chr2 (56-333)||(8395217-8395494)
chr2 (58-333)||(8375531-8375806)
chr2 (58-333)||(8439297-8439572)
chr2 (56-333)||(8417413-8417690)
chr2 (183-306)||(8431353-8431476)
chr2 (230-297)||(41119234-41119301)
chr2 (297-333)||(8394974-8395010)
chr2 (230-333)||(8368638-8368741)
chr2 (230-296)||(8400706-8400772)
chr2 (230-296)||(8422283-8422349)
chr2 (108-165)||(8404183-8404240)
chr2 (248-333)||(8404329-8404414)
[»] chr4 (2 HSPs)
chr4 (59-159)||(55331017-55331117)
chr4 (58-147)||(55336451-55336540)


Alignment Details
Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 58 - 333
Target Start/End: Original strand, 8412200 - 8412475
Alignment:
Q  58 aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc 157  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| ||||  |||||||||||||||    
T  8412200 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8412299  T
Q  158 attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  8412300 attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgtt 8412399  T
Q  258 cctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcaga 333  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8412400 cctctgtgagttgagagggttggattttgttcatgataaacaataatccagtggcagcagagaataaaagagcaga 8412475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 58 - 333
Target Start/End: Original strand, 8434298 - 8434573
Alignment:
Q  58 aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc 157  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| ||||  |||||||||||||||    
T  8434298 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8434397  T
Q  158 attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  8434398 attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgtt 8434497  T
Q  258 cctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcaga 333  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8434498 cctctgtgagttgagagggttggattttgttcatgataaacaataatccagtggcagcagagaataaaagagcaga 8434573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 56 - 333
Target Start/End: Original strand, 8406078 - 8406355
Alignment:
Q  56 gaaggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacctttt 155  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8406078 gaaggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacttttt 8406177  T
Q  156 ccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttg 255  Q
    |||||||| | || |||||||||||  |||||||||||| ||| ||||||||||  ||||  ||||||||||| |||||||| ||||| ||||| |||||    
T  8406178 ccattgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttctttg 8406277  T
Q  256 ttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcaga 333  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8406278 ttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcaga 8406355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 56 - 333
Target Start/End: Complemental strand, 8395494 - 8395217
Alignment:
Q  56 gaaggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacctttt 155  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  8395494 gaaggccaccaagtagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacttttt 8395395  T
Q  156 ccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttg 255  Q
    |||||||| | || |||||||||||  |||||||||||| ||| ||||||||||  ||||  ||||||||||| |||||||| ||||| ||||| |||||    
T  8395394 ccattgcacccttaacatcttcctcactaggatttccaagagctattgtagtttgaatattgctttgaagttgtttgaacaatcttgtagcatttctttg 8395295  T
Q  256 ttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcaga 333  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  8395294 ttcctctgtgagttgagagggttggattttgttcatgataatcaataatccagtggcagcagagaataaaagagcaga 8395217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 58 - 333
Target Start/End: Complemental strand, 8375806 - 8375531
Alignment:
Q  58 aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc 157  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| ||||  |||||||||||||||    
T  8375806 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaattgccaaaaccttttcc 8375707  T
Q  158 attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt 257  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  8375706 attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaatcttgtagcatttctttgtt 8375607  T
Q  258 cctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcaga 333  Q
    |||| |  | |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  8375606 cctcggccaattgagaaggttggattttgttcatgataagcaacaatccagtggctgcagagaataaaagagcaga 8375531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 58 - 333
Target Start/End: Original strand, 8439297 - 8439572
Alignment:
Q  58 aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcc 157  Q
    |||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||| ||||| || |||||||| ||||| |||||||||||||||    
T  8439297 aggccaccaattagcaggttcaaattttgaagggtatttttcaagcattgctcccaataaaggaagagggtatgctttatcaagtgccaaaaccttttcc 8439396  T
Q  158 attgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgtt 257  Q
    ||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||| ||||||||||||||||||||||| ||||| ||||| |||||||    
T  8439397 attgcatctttgacatcttcctcggtaggatttcctatagcaattttagtttggatttgactttgaagttgcttgaacaatcttgtagcatttctttgtt 8439496  T
Q  258 cctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcaga 333  Q
    |||| |  | |||||| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||    
T  8439497 cctcggccaattgagaaggttggattttgttcatgataagcaacaatccagtggctgcagagaataaaagagcaga 8439572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 56 - 333
Target Start/End: Original strand, 8417413 - 8417690
Alignment:
Q  56 gaaggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaacctttt 155  Q
    ||||||||||||||||||||  ||||||| |||||||| ||||||||||||||||| ||||| |||||||| | |||||| ||| | |||||||| ||||    
T  8417413 gaaggccaccaattagcaggaacaaatttagcagggtaattttcaagcattgctcccaataaaggaagtgggtgtgctttatcatgtgccaaaacttttt 8417512  T
Q  156 ccattgcatctttgacatcttcctcggtaggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttg 255  Q
    | || || |||||||||||||| |  |||| |||||||| ||||||| | |||| ||| ||||||||||||||||||||||| ||||| |  || | |||    
T  8417513 caatagcttctttgacatcttctttagtagaatttccaagagcaatttttgtttggatttgactttgaagttgcttgaacaatcttgtagtgtttcattg 8417612  T
Q  256 ttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcaga 333  Q
     ||||| |  | |||||| |||||||||||||||||||||||||| ||||| ||||| ||||| || |||||||||||    
T  8417613 ctcctcggccaattgagaaggttggattttgttcatgataagcaacaatccggtggctgcagaaaacaaaagagcaga 8417690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 183 - 306
Target Start/End: Original strand, 8431353 - 8431476
Alignment:
Q  183 taggatttccaatagcaattgtagttttgatatgactttgaagttgcttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggat 282  Q
    |||||||||||| ||||||||||||||  || || |||||||||| ||||||||| ||||| |||||||||||||| |||||||||||||||||||||||    
T  8431353 taggatttccaagagcaattgtagtttgaatttgcctttgaagttacttgaacaatcttgtggcattcctttgttcttctgtgagttgagagggttggat 8431452  T
Q  283 tttgttcatgataagcaataatcc 306  Q
    |||||||||||||||||| |||||    
T  8431453 tttgttcatgataagcaacaatcc 8431476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 230 - 297
Target Start/End: Original strand, 41119234 - 41119301
Alignment:
Q  230 ttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggattttgttcatgataag 297  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  41119234 ttgaacattcttgtagcattcctttgttcctctgtgagttgagagggttggggtttgttcatgataag 41119301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 297 - 333
Target Start/End: Complemental strand, 8395010 - 8394974
Alignment:
Q  297 gcaataatccagtggcagcagagaataaaagagcaga 333  Q
    |||||||||||||||||||||||||||||||||||||    
T  8395010 gcaataatccagtggcagcagagaataaaagagcaga 8394974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 230 - 333
Target Start/End: Original strand, 8368638 - 8368741
Alignment:
Q  230 ttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagag 329  Q
    |||||||| ||||||||||| ||||| ||||| |  ||||| || ||||||||||||||||||||||  || |  ||||| | ||| ||||||||||| |    
T  8368638 ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataattaacataccagtagaagctgagaataaaagtg 8368737  T
Q  330 caga 333  Q
    ||||    
T  8368738 caga 8368741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 8400772 - 8400706
Alignment:
Q  230 ttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggattttgttcatgataa 296  Q
    |||||||| ||||||||||| ||||| ||||| |  ||||| || ||||||||||||||||||||||    
T  8400772 ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa 8400706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 230 - 296
Target Start/End: Complemental strand, 8422349 - 8422283
Alignment:
Q  230 ttgaacaaccttgttgcattcctttgttcctctgtgagttgagagggttggattttgttcatgataa 296  Q
    |||||||| ||||||||||| ||||| ||||| |  ||||| || ||||||||||||||||||||||    
T  8422349 ttgaacaatcttgttgcatttctttgctcctcagcaagttgtgaaggttggattttgttcatgataa 8422283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 108 - 165
Target Start/End: Original strand, 8404183 - 8404240
Alignment:
Q  108 ctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttccattgcatc 165  Q
    |||||||||| ||||||||||| ||||| ||||| ||||||||||| || ||||||||    
T  8404183 ctcctaataaaggaagtggataggctttatcaagagccaaaaccttctcaattgcatc 8404240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 248 - 333
Target Start/End: Original strand, 8404329 - 8404414
Alignment:
Q  248 ttcctttgttcctctgtgagttgagagggttggattttgttcatgataagcaataatccagtggcagcagagaataaaagagcaga 333  Q
    ||||||||||| ||||  ||||| || ||||||||||||||||| | ||| |||| ||||||||| ||||| ||||| | ||||||    
T  8404329 ttcctttgttcttctgcaagttgtgaaggttggattttgttcatcacaagtaatattccagtggcggcagaaaataacatagcaga 8404414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 159
Target Start/End: Original strand, 55331017 - 55331117
Alignment:
Q  59 ggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaaaaccttttcca 158  Q
    |||||||||  |||||| | | ||||||||||  |||||||||||||  | |||||||| ||||||||||| ||||||||||| |||||||| || ||||    
T  55331017 ggccaccaaacagcaggtttatattttgcaggaaatttttcaagcataacacctaataaaggaagtggataagctttgtcaagtgccaaaactttctcca 55331116  T
Q  159 t 159  Q
    |    
T  55331117 t 55331117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 58 - 147
Target Start/End: Original strand, 55336451 - 55336540
Alignment:
Q  58 aggccaccaattagcaggctcaaattttgcagggtatttttcaagcattgctcctaataatggaagtggatatgctttgtcaagggccaa 147  Q
    ||||||||||  || ||| ||| ||||||||||  | ||||||||||| |||||||| |  ||||||||||| ||||||||||| |||||    
T  55336451 aggccaccaaacagaaggttcatattttgcaggaaacttttcaagcatagctcctaacagaggaagtggataagctttgtcaagtgccaa 55336540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University