View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_low_2 (Length: 751)
Name: NF18793_low_2
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 542; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 73 - 666
Target Start/End: Original strand, 23116212 - 23116804
Alignment:
| Q |
73 |
gtctttgttcaagaagttgtacgtttgcatggattccttgccactattgtttctgaccgtgacaaactcttcctcagtcatttttggactgaattattca |
172 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23116212 |
gtctttgttcaagaagttgtacgtttgcatggattccctgccactattgtttctgacc-tgacaaactcttcctcagtcatttttggactgaattattca |
23116310 |
T |
|
| Q |
173 |
aattagcaggaaccaaactcaagttcagtacagcttatcatcctcaaactgatggtcagacagaggtgactaatcggtgtttagaaacttacctcagatg |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23116311 |
aattagcaggaaccaaactcaagttcagtacagcttatcatcctcaaacggatggtcagacagaggtgactaatcggtgtttagaaacttacctcagatg |
23116410 |
T |
|
| Q |
273 |
cctaaccggtgctaagcctagattatgggttaaatggttaggatgggctgaattctggttcaactcaaattacaacagctccacaagaactactcccttc |
372 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23116411 |
cctaaccggtgctaagcctagattatgggttaaatggttagggtgggctgaattctggttcaactcaaattacaacagctccacaagaactactcccttc |
23116510 |
T |
|
| Q |
373 |
aatgctttgtatggttgggaccctcctcatttgattagaggtacaactattccttcatctgtggatgaggttaatagaataactgcggaaagagacacca |
472 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23116511 |
aatgctttgtatggtcgggaccctcctcatttgattagaggtacaactattccttcatctgtggatgaggttaatagaataactgcggaaagagacacca |
23116610 |
T |
|
| Q |
473 |
ttcctcatgaccttcgttctaatttgctgaaagctcaagatcagatgcgcacccaagcaaataaacacagacgtgaggtttcctacgttgttggtgattg |
572 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
23116611 |
ttcttcatgaccttcgttctaatttgctgaaagctcaagatcagatgcgcacccaagcaaataaacacaggcgtgaggtttcctacgttgttgatgattg |
23116710 |
T |
|
| Q |
573 |
tgtttatctcaaacttcagccgtacagactcaaatctttagctaagcgaattaatgagaagttaagtcctcgtttctatggtccttatagaatt |
666 |
Q |
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|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
23116711 |
ggtttatctcaaacttcagccatacagactcaaatctttggctaagcgaattaatgagaagttaagtcctcgtttctatggtccttataaaatt |
23116804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 660 - 743
Target Start/End: Original strand, 23116855 - 23116938
Alignment:
| Q |
660 |
tagaattcatcctgttttccatgtatctttgttgaagaaagctataattccaactgtcaatcctcagcctttaccgcctttgct |
743 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
23116855 |
tagaattcatcctgttttccatgtatctttgttgaagaaagctataattccaactgtcaatcctcagcccttaccgcctatgct |
23116938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 542; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 542; E-Value: 0
Query Start/End: Original strand, 73 - 666
Target Start/End: Original strand, 25063432 - 25064025
Alignment:
| Q |
73 |
gtctttgttcaagaagttgtacgtttgcatggattccttgccactattgtttctgaccgtgacaaactcttcctcagtcatttttggactgaattattca |
172 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25063432 |
gtctttgttcaagaagttgtacgtttgcatggattccctgccactaaggtttctgaccgtgacaaactcttcctcagtcatttttggactgaattattca |
25063531 |
T |
|
| Q |
173 |
aattagcaggaaccaaactcaagttcagtacagcttatcatcctcaaactgatggtcagacagaggtgactaatcggtgtttagaaacttacctcagatg |
272 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25063532 |
aattagcaggaaccaaactcaagttcagtacagcttatcatcctcaaacggatggtcagacagaggtgactaatcggtgtttagaaacttacctcagatg |
25063631 |
T |
|
| Q |
273 |
cctaaccggtgctaagcctagattatgggttaaatggttaggatgggctgaattctggttcaactcaaattacaacagctccacaagaactactcccttc |
372 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25063632 |
cctaaccggtgctaagcctagattatgggttaaatggttagggtgggctgaattctggttcaactcaaattacaacagctccacaagaactactcccttc |
25063731 |
T |
|
| Q |
373 |
aatgctttgtatggttgggaccctcctcatttgattagaggtacaactattccttcatctgtggatgaggttaatagaataactgcggaaagagacacca |
472 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25063732 |
aatgctttgtatggtcgggaccctcctcatttgattagaggtacaactattccttcatctgtggatgaggttaatagaataactgcggaaagagacacca |
25063831 |
T |
|
| Q |
473 |
ttcctcatgaccttcgttctaatttgctgaaagctcaagatcagatgcgcacccaagcaaataaacacagacgtgaggtttcctacgttgttggtgattg |
572 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
25063832 |
ttcttcatgaccttcgttctaatttgctgaaagctcaagatcagatgcgcacccaagcaaataaacacaggcgtgaggtttcctacgttgttgttgattg |
25063931 |
T |
|
| Q |
573 |
tgtttatctcaaacttcagccgtacagactcaaatctttagctaagcgaattaatgagaagttaagtcctcgtttctatggtccttatagaatt |
666 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25063932 |
ggtttatctcaaacttcagccatacagactcaaatctttggctaagcgaattaatgagaagttaagtcctcgtttctatggtccttataaaatt |
25064025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 76; E-Value: 1e-34
Query Start/End: Original strand, 660 - 743
Target Start/End: Original strand, 25064076 - 25064159
Alignment:
| Q |
660 |
tagaattcatcctgttttccatgtatctttgttgaagaaagctataattccaactgtcaatcctcagcctttaccgcctttgct |
743 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
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| T |
25064076 |
tagaattcatcctgttttccatgtatctttgttgaagaaagctataattccaactgtcaatcctcagcccttaccgcctatgct |
25064159 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 19 - 78
Target Start/End: Original strand, 31321753 - 31321812
Alignment:
| Q |
19 |
gtattgtcacggtacgcgtttttcatcatgctcttcctctcacatgaccttcacgtcttt |
78 |
Q |
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||||||||| |||| |||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
31321753 |
gtattgtcatggtaggcgtttttcatcatgctcttcctctcacatgaccttaacgtcttt |
31321812 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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