View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_low_20 (Length: 312)
Name: NF18793_low_20
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_low_20 |
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| [»] chr6 (3 HSPs) |
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| [»] scaffold0244 (1 HSPs) |
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| [»] scaffold0171 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 215 - 312
Target Start/End: Complemental strand, 4744790 - 4744693
Alignment:
| Q |
215 |
ttgatatgacgacgacgacagattgcaaacgaggaggaacctcaaccagaaccctaacaccactgcctcccaccaactctcctccgttacttccattc |
312 |
Q |
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| T |
4744790 |
ttgatatgacgacgatgacaggtcgcaaacgaggaggaacctcaaccagaaccctaacaccactgcctcccactaactctcctccgttacttccattc |
4744693 |
T |
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Target: chr6; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 215 - 312
Target Start/End: Complemental strand, 4183951 - 4183854
Alignment:
| Q |
215 |
ttgatatgacgacgacgacagattgcaaacgaggaggaacctcaaccagaaccctaacaccactgcctcccaccaactctcctccgttacttccattc |
312 |
Q |
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| T |
4183951 |
ttgatatgacgacgatgacaggtcgcaaacgaggaggaacctcaaccagaaccctaacacaactgcctcccactaactctcctccgttacttccattc |
4183854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 145
Target Start/End: Complemental strand, 2332739 - 2332690
Alignment:
| Q |
96 |
ggaatgaaagaactttaaagagggccaatagaatcatccaagaaaggtct |
145 |
Q |
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| T |
2332739 |
ggaatgaaagagctgtgaagaggaccaataaaatcatccaagaaaggtct |
2332690 |
T |
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Target: scaffold0244 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0244
Description:
Target: scaffold0244; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 16291 - 16353
Alignment:
| Q |
108 |
ctttaaagagggccaatagaatcatccaagaaaggtctaatacgtctgactagcactttggaa |
170 |
Q |
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| T |
16291 |
ctttgaagagggccaataaaatcatccaagaaaggtctaatacgcctaactagtactttggaa |
16353 |
T |
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Target: scaffold0171 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0171
Description:
Target: scaffold0171; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 170
Target Start/End: Original strand, 723 - 800
Alignment:
| Q |
93 |
ttaggaatgaaagaactttaaagagggccaatagaatcatccaagaaaggtctaatacgtctgactagcactttggaa |
170 |
Q |
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| T |
723 |
ttaggaatgaaagagttttggagagggccaataaaatcatccaagaaaggtttgatacatctcacaagaactttggaa |
800 |
T |
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