View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_low_23 (Length: 288)
Name: NF18793_low_23
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_low_23 |
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Alignment Details
Target: chr4 (Bit Score: 232; Significance: 1e-128; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 30719725 - 30719976
Alignment:
| Q |
19 |
cctgctcattgttggcagggacatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataagg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |
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| T |
30719725 |
cctgctcattgttggcagggacatcttcatacccggtaatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggg |
30719824 |
T |
|
| Q |
119 |
atattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719825 |
gtattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtca |
30719924 |
T |
|
| Q |
219 |
caatcaacaagttcttgttccgataaagagaccaacttcccagtactcaact |
270 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30719925 |
caatcaacaagttcttgttccgataaagagaccaacttcccagtactcaact |
30719976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 19 - 270
Target Start/End: Complemental strand, 30881634 - 30881383
Alignment:
| Q |
19 |
cctgctcattgttggcagggacatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataagg |
118 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || |
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| T |
30881634 |
cctgctcattgttggcagggacatcttcatacccggtaatagtaactgcatggatggatgctttgtttgcactgcaagttccgtcaacaccttgataggg |
30881535 |
T |
|
| Q |
119 |
atattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtca |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881534 |
gtattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtca |
30881435 |
T |
|
| Q |
219 |
caatcaacaagttcttgttccgataaagagaccaacttcccagtactcaact |
270 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30881434 |
caatcaacaagttcttgttccgataaagagaccaacttcccagtactcaact |
30881383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 19 - 270
Target Start/End: Original strand, 44731161 - 44731412
Alignment:
| Q |
19 |
cctgctcattgttggcagggacatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataagg |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||| |||||| |||| ||||| ||||||||||||||||| |
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| T |
44731161 |
cctgctcattgttggcagggacatcttcatacccggtaatggtagctgcatgaatggacgctttgtttgcattgcatgttccgtcaacaccttgataagg |
44731260 |
T |
|
| Q |
119 |
atattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtca |
218 |
Q |
| |
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||| |||||||| | ||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
44731261 |
gtatgcggcttcagtactaagtccgtgattttgaatgatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacaccttttgtgtca |
44731360 |
T |
|
| Q |
219 |
caatcaacaagttcttgttccgataaagagaccaacttcccagtactcaact |
270 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
44731361 |
caatcaacaagttcttgttccgataaagagaccaactttccagtactcaact |
44731412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 176; E-Value: 7e-95
Query Start/End: Original strand, 23 - 270
Target Start/End: Complemental strand, 30892713 - 30892466
Alignment:
| Q |
23 |
ctcattgttggcagggacatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggatat |
122 |
Q |
| |
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||||||||| || |||||||||||||| || | ||| ||| | ||| || | || | || |||||||||||||||||| |||||||||||||| || ||| |
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| T |
30892713 |
ctcattgtttgccgggacatcttcatatccagcaatagtagcagcaggggttgaagtttcatttgcactgcaagttccgtcaacaccttgataggggtat |
30892614 |
T |
|
| Q |
123 |
tgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaat |
222 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30892613 |
tgagcttcagtgtggagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcacaat |
30892514 |
T |
|
| Q |
223 |
caacaagttcttgttccgataaagagaccaacttcccagtactcaact |
270 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30892513 |
caacaagttcttgttccgataaagagaccaacttcccagtactcaact |
30892466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 149; E-Value: 1e-78
Query Start/End: Original strand, 19 - 275
Target Start/End: Original strand, 16867548 - 16867804
Alignment:
| Q |
19 |
cctgctcattgttggcagggacatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataagg |
118 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |||||||||||||||| ||||||| |||| ||||| |||| || || ||||||||||||||||| |
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| T |
16867548 |
cctgctcattgttggtcgggacatcttcatacccagtaatggtaactgcattgatggatcctttgtttgcgttgcatgtcccgtcaacaccttgataagg |
16867647 |
T |
|
| Q |
119 |
atattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtca |
218 |
Q |
| |
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|| | ||||| || || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| |
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| T |
16867648 |
gtagttggcttcggtatttagtccatgattttgaatgatgaatttgaaagcatcgtccataagaccaccctcacaaccttggtccacacctttcgtgtca |
16867747 |
T |
|
| Q |
219 |
caatcaacaagttcttgttccgataaagagaccaacttcccagtactcaactgatga |
275 |
Q |
| |
|
|| ||||| ||||||||||| |||||||||| |||||| ||||||||||||| |||| |
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|
| T |
16867748 |
cagtcaacgagttcttgttctgataaagagatcaactttccagtactcaacttatga |
16867804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 275
Target Start/End: Complemental strand, 8899247 - 8898993
Alignment:
| Q |
21 |
tgctcattgttggcagggacatcttcatacccggtaatggtaactgcatggatggatgctttatttgcactgcaagttccatcaacaccttgataaggat |
120 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||| ||| || |||||||||||||||||| | || |||||||||||||| ||||| || | |
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|
| T |
8899247 |
tgctcattgttggcaggaacatcttcatacccggtaatagtagttgcttgaatggatgctttatttgcattacatgttccatcaacaccctgataggggt |
8899148 |
T |
|
| Q |
121 |
attgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcaca |
220 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8899147 |
attgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctcacaaccttggtctacaccttttgtgtcaca |
8899048 |
T |
|
| Q |
221 |
atcaacaagttcttgttccgataaagagaccaacttcccagtactcaactgatga |
275 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
8899047 |
atcaacaagttcttgttctgataaagagaccaactttccagtactcaacttatga |
8898993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 91 - 253
Target Start/End: Complemental strand, 31727335 - 31727173
Alignment:
| Q |
91 |
tgcaagttccatcaacaccttgataaggatattgagcttcagtgttgagtccatgattttgaatgatgaatttgaaagcatcatccataagaccaccctc |
190 |
Q |
| |
|
|||| ||||||||||||||||||||||| |||| |||||||||| | ||||||| |||||| |||||||||| |||||||||||||||||||||||||| |
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|
| T |
31727335 |
tgcatgttccatcaacaccttgataagggtattcagcttcagtgctaagtccattattttggatgatgaattcaaaagcatcatccataagaccaccctc |
31727236 |
T |
|
| Q |
191 |
acaaccttggtctacaccttttgtgtcacaatcaacaagttcttgttccgataaagagaccaa |
253 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
31727235 |
acaaccttggtcttcaccatttgtgtcacaatcaacaagttcttgttctgataaagagaccaa |
31727173 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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