View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18793_low_25 (Length: 275)
Name: NF18793_low_25
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_low_25 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 10 - 242
Target Start/End: Original strand, 36900023 - 36900254
Alignment:
| Q |
10 |
aagaatatctaacatatacaagacaatgaaaaagggtgcggatctattttattataatcctctcttttgagattttaattcaatcatctcttaagggagg |
109 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
36900023 |
aagaaaatctaacatatacaagacaatgaaaaagggtgcggatctattttattataatcctctctcttgagattgtaattcaatcatctcttaagggaga |
36900122 |
T |
|
| Q |
110 |
aaaatataatttattttaaatacttttaaagaaggagagtgtgattcaattttattttattttcagaggaagaaggtgtagtttactccaatattttaaa |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
36900123 |
aaaatataatttattttaaatacttttaaagaaggagagtgtgattcaattttatttt-ttttcagaggaagaagttgtagtttactccaatattttaaa |
36900221 |
T |
|
| Q |
210 |
accaactgttttcattttgtaggaaaatggttt |
242 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
36900222 |
accaactgttttcattttgtaggaaaatggttt |
36900254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 5700930 - 5700893
Alignment:
| Q |
31 |
gacaatgaaaaagggtgcggatctattttattataatc |
68 |
Q |
| |
|
||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
5700930 |
gacaatgaaaaagagtgcggatccattttattataatc |
5700893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University