View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18793_low_32 (Length: 230)

Name: NF18793_low_32
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18793_low_32
NF18793_low_32
[»] chr6 (4 HSPs)
chr6 (57-216)||(34437772-34437931)
chr6 (86-216)||(34444519-34444649)
chr6 (16-56)||(29229025-29229065)
chr6 (17-52)||(17828687-17828722)
[»] chr3 (4 HSPs)
chr3 (16-57)||(29586253-29586294)
chr3 (16-53)||(33632743-33632780)
chr3 (24-58)||(50463438-50463472)
chr3 (17-54)||(10474557-10474594)
[»] chr2 (2 HSPs)
chr2 (16-57)||(19908696-19908737)
chr2 (16-56)||(38397000-38397040)
[»] chr7 (1 HSPs)
chr7 (17-56)||(5464022-5464061)
[»] chr5 (2 HSPs)
chr5 (17-56)||(29340914-29340953)
chr5 (16-56)||(31546403-31546443)
[»] chr1 (4 HSPs)
chr1 (16-56)||(32618717-32618757)
chr1 (20-56)||(40988775-40988811)
chr1 (19-56)||(5047501-5047538)
chr1 (19-56)||(9651955-9651992)
[»] scaffold0121 (1 HSPs)
scaffold0121 (19-56)||(29681-29718)


Alignment Details
Target: chr6 (Bit Score: 116; Significance: 4e-59; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 57 - 216
Target Start/End: Complemental strand, 34437931 - 34437772
Alignment:
Q  57 ctagtatcatacatctttctagatgttacaacatgtcataccattgtctttggatgttggaagtacatcaagttgtcttactacataaatctccactgca 156  Q
    ||||| |||||||||||| |||||||||||||||||||||||||  ||||  |||||||||||| |||||||||||||||||||||||||||||||||||    
T  34437931 ctagtctcatacatctttttagatgttacaacatgtcataccatcttcttcagatgttggaagtgcatcaagttgtcttactacataaatctccactgca 34437832  T
Q  157 ttaagtataggttgaagcgttgaaccttcggttttttgtattgaaattcgatgttcattt 216  Q
    |||||||||||| |||| |||||| |||| ||||||||||||||||||||||||||||||    
T  34437831 ttaagtataggtggaagagttgaatcttcagttttttgtattgaaattcgatgttcattt 34437772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 86 - 216
Target Start/End: Complemental strand, 34444649 - 34444519
Alignment:
Q  86 aacatgtcataccattgtctttggatgttggaagtacatcaagttgtcttactacataaatctccactgcattaagtataggttgaagcgttgaaccttc 185  Q
    ||||||||||||| |  ||||  |||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||| ||||||||||  ||||    
T  34444649 aacatgtcataccgtcttcttcagatgttggaagtgcatcatgttgtcttactacataaatctccactgcattaagaataggtggaagcgttgagtcttc 34444550  T
Q  186 ggttttttgtattgaaattcgatgttcattt 216  Q
     |||||| |||| ||||||||||||||||||    
T  34444549 agtttttcgtatcgaaattcgatgttcattt 34444519  T

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Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 29229065 - 29229025
Alignment:
Q  16 gatgaaatggagagaataataaatggagaggatcttaactc 56  Q
    |||||||| ||||||||||||||||||||||||||||||||    
T  29229065 gatgaaatcgagagaataataaatggagaggatcttaactc 29229025  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 17828687 - 17828722
Alignment:
Q  17 atgaaatggagagaataataaatggagaggatctta 52  Q
    ||||||||||||||||||||||||||||||||||||    
T  17828687 atgaaatggagagaataataaatggagaggatctta 17828722  T

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Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 29586294 - 29586253
Alignment:
Q  16 gatgaaatggagagaataataaatggagaggatcttaactcc 57  Q
    ||||||||||||||||||||||||||||| ||||||||||||    
T  29586294 gatgaaatggagagaataataaatggagatgatcttaactcc 29586253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 53
Target Start/End: Complemental strand, 33632780 - 33632743
Alignment:
Q  16 gatgaaatggagagaataataaatggagaggatcttaa 53  Q
    ||||||||||||||||||||||||||||||||||||||    
T  33632780 gatgaaatggagagaataataaatggagaggatcttaa 33632743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 24 - 58
Target Start/End: Original strand, 50463438 - 50463472
Alignment:
Q  24 ggagagaataataaatggagaggatcttaactcct 58  Q
    |||||||||||||||||||||||||||||||||||    
T  50463438 ggagagaataataaatggagaggatcttaactcct 50463472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 54
Target Start/End: Original strand, 10474557 - 10474594
Alignment:
Q  17 atgaaatggagagaataataaatggagaggatcttaac 54  Q
    ||||||||||||||||||||||||||||| ||||||||    
T  10474557 atgaaatggagagaataataaatggagagaatcttaac 10474594  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 19908737 - 19908696
Alignment:
Q  16 gatgaaatggagagaataataaatggagaggatcttaactcc 57  Q
    ||||||||| ||||||||||||||||||||||||||||||||    
T  19908737 gatgaaatgaagagaataataaatggagaggatcttaactcc 19908696  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 38397040 - 38397000
Alignment:
Q  16 gatgaaatggagagaataataaatggagaggatcttaactc 56  Q
    |||||||||||||||| ||||||||||||  ||||||||||    
T  38397040 gatgaaatggagagaaaaataaatggagaatatcttaactc 38397000  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Original strand, 5464022 - 5464061
Alignment:
Q  17 atgaaatggagagaataataaatggagaggatcttaactc 56  Q
    ||||||||||||||||||||||||||||| ||||||||||    
T  5464022 atgaaatggagagaataataaatggagagaatcttaactc 5464061  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 17 - 56
Target Start/End: Complemental strand, 29340953 - 29340914
Alignment:
Q  17 atgaaatggagagaataataaatggagaggatcttaactc 56  Q
    |||||||||||||||||||||||||||| |||||||||||    
T  29340953 atgaaatggagagaataataaatggagaagatcttaactc 29340914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 31546443 - 31546403
Alignment:
Q  16 gatgaaatggagagaataataaatggagaggatcttaactc 56  Q
    |||||||| |||||||||||||||||||| |||||||||||    
T  31546443 gatgaaatagagagaataataaatggagatgatcttaactc 31546403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Complemental strand, 32618757 - 32618717
Alignment:
Q  16 gatgaaatggagagaataataaatggagaggatcttaactc 56  Q
    |||||||| ||||||||||||||||||||| ||||||||||    
T  32618757 gatgaaatagagagaataataaatggagagaatcttaactc 32618717  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 56
Target Start/End: Complemental strand, 40988811 - 40988775
Alignment:
Q  20 aaatggagagaataataaatggagaggatcttaactc 56  Q
    |||| ||||||||||||||||||||||||||||||||    
T  40988811 aaatagagagaataataaatggagaggatcttaactc 40988775  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 5047501 - 5047538
Alignment:
Q  19 gaaatggagagaataataaatggagaggatcttaactc 56  Q
    |||||||||| | |||||||||||||||||||||||||    
T  5047501 gaaatggagatagtaataaatggagaggatcttaactc 5047538  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Complemental strand, 9651992 - 9651955
Alignment:
Q  19 gaaatggagagaataataaatggagaggatcttaactc 56  Q
    |||||||||||| ||| |||||||||||||||||||||    
T  9651992 gaaatggagagactaacaaatggagaggatcttaactc 9651955  T

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Target: scaffold0121 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 29681 - 29718
Alignment:
Q  19 gaaatggagagaataataaatggagaggatcttaactc 56  Q
    ||||||||||| || |||||||||||||||||||||||    
T  29681 gaaatggagaggatgataaatggagaggatcttaactc 29718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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