View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18793_low_33 (Length: 229)

Name: NF18793_low_33
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18793_low_33
NF18793_low_33
[»] chr3 (27 HSPs)
chr3 (39-206)||(18165773-18165940)
chr3 (39-206)||(19464970-19465137)
chr3 (34-206)||(19414796-19414968)
chr3 (34-206)||(19437570-19437742)
chr3 (34-206)||(18147442-18147614)
chr3 (34-205)||(18873095-18873266)
chr3 (39-206)||(25463667-25463834)
chr3 (35-206)||(18109052-18109223)
chr3 (34-206)||(19376234-19376406)
chr3 (35-206)||(17950445-17950616)
chr3 (102-206)||(17942634-17942738)
chr3 (34-206)||(19334621-19334793)
chr3 (109-206)||(19400413-19400510)
chr3 (107-198)||(16677895-16677986)
chr3 (38-208)||(18103962-18104132)
chr3 (109-206)||(14895606-14895703)
chr3 (102-206)||(19381573-19381677)
chr3 (34-206)||(19393761-19393933)
chr3 (103-200)||(19354396-19354493)
chr3 (102-206)||(18116645-18116749)
chr3 (44-204)||(19425309-19425469)
chr3 (103-206)||(18016703-18016806)
chr3 (103-206)||(19352073-19352176)
chr3 (137-206)||(19439359-19439428)
chr3 (35-206)||(17726753-17726924)
chr3 (35-206)||(19027982-19028153)
chr3 (102-206)||(19461867-19461973)
[»] chr4 (2 HSPs)
chr4 (34-206)||(15536145-15536317)
chr4 (34-206)||(2709804-2709976)
[»] scaffold0648 (1 HSPs)
scaffold0648 (39-206)||(3320-3487)
[»] scaffold0640 (1 HSPs)
scaffold0640 (39-206)||(6020-6187)
[»] scaffold0274 (2 HSPs)
scaffold0274 (39-206)||(2789-2956)
scaffold0274 (102-198)||(21304-21400)
[»] chr8 (1 HSPs)
chr8 (41-198)||(8460164-8460321)
[»] chr6 (1 HSPs)
chr6 (75-182)||(13666190-13666297)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 27)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 39 - 206
Target Start/End: Original strand, 18165773 - 18165940
Alignment:
Q  39 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 138  Q
    ||||||||||||||||||  |||||||||||||||||||||||  ||||||||||||||  |||||||||||||||||||||||||||||||||||||||    
T  18165773 tgtggagtaataggctatttggtgaagtttcattgcacttctccgatttgaaccaattggaaatcatgaacttgggagaaaatgaattttctggaaccat 18165872  T
Q  139 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    ||||||  |||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  18165873 accaattttgatttcacaaaagttagaagtggtcatattgagagctaaccaatttgaagggactattc 18165940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 39 - 206
Target Start/End: Original strand, 19464970 - 19465137
Alignment:
Q  39 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 138  Q
    ||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||  || |||||||||||| |||||||||||||||||||||||    
T  19464970 tgtggagtaataggctatctggtgaagtttcgttgcacttctctaatttgaaccaattggaaaacatgaacttgggcgaaaatgaattttctggaaccat 19465069  T
Q  139 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    ||| ||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  19465070 acctatcttgatttcacaagacttagaagtggtcatattgagagctaaccaatttgaagggactattc 19465137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 19414796 - 19414968
Alignment:
Q  34 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 133  Q
    |||||||||||||||||||||||| ||||||||| | ||| ||| ||||  || ||| ||||| ||| ||||||| ||||||||||||||||||| ||||    
T  19414796 gaacctgtggagtaataggctatctggtgaagttcctttgtactgctctggttggaagcaattaagagtcatgaatttgggagaaaatgaattttatgga 19414895  T
Q  134 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  19414896 accataccaatcatgatgtcacagaacttagaagtggtcatattgagagataaccgatttgaagggactattc 19414968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 19437570 - 19437742
Alignment:
Q  34 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 133  Q
    ||||||||||||||||||| | ||||| ||| || ||||| ||||||||||   ||| ||||||  || ||||||||| |||||||||||||||||||||    
T  19437570 gaacctgtggagtaataggttgtcaggggaacttccattgtacttctctaaccggaaacaattggaaaccatgaacttaggagaaaatgaattttctgga 19437669  T
Q  134 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||    
T  19437670 accataccaatcatgatgtcacaaaacttaaaagtggtcatattgagagctaataaatttgaagggactattc 19437742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 18147442 - 18147614
Alignment:
Q  34 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 133  Q
    ||||||||||||||||||| | || || ||| || ||||| |||||||| | | ||| ||||||  |||||||||||| |||||||||||||||||||||    
T  18147442 gaacctgtggagtaataggttgtctggggaacttccattgtacttctcttactggaaacaattggaaatcatgaacttaggagaaaatgaattttctgga 18147541  T
Q  134 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||||    
T  18147542 accataccaatcatgatgtcacaaaacttactagtggtcatattgagagctaataaatttgaagggactattc 18147614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 34 - 205
Target Start/End: Complemental strand, 18873266 - 18873095
Alignment:
Q  34 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 133  Q
    |||||||||||||||||||||||| |||||||||  |   ||| ||||| | | ||| || |||   ||| |||| ||||||||||||||||||||||||    
T  18873266 gaacctgtggagtaataggctatctggtgaagttcaagatcacctctctgaatggaaacagttgcagatcttgaatttgggagaaaatgaattttctgga 18873167  T
Q  134 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactatt 205  Q
    | ||||||| ||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||| ||||    
T  18873166 aacataccattcatgatgtcacaaaacctagaagtagtcatattgagagctaaccaatttgaagggaatatt 18873095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 39 - 206
Target Start/End: Original strand, 25463667 - 25463834
Alignment:
Q  39 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 138  Q
    |||||| |||||||||||| |||||||||  | | ||| ||||| ||| ||  ||||||  |||||||||||||||||||||||||||||||||||||||    
T  25463667 tgtggaataataggctatctggtgaagttctagtacacctctctgattggagacaattggaaatcatgaacttgggagaaaatgaattttctggaaccat 25463766  T
Q  139 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    |||||| |  ||| ||| | ||||||||||||||||||||||||| |||||||||||||||| |||||    
T  25463767 accaatgaacatgccactatacttagaagtggtcatattgagagcaaaccaatttgaagggaatattc 25463834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 35 - 206
Target Start/End: Original strand, 18109052 - 18109223
Alignment:
Q  35 aacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaa 134  Q
    ||||| ||||||||||||||||| |||||||||  |   ||| ||||| ||| ||  ||||||  |||||||||||||||||||||||||||||||| ||    
T  18109052 aacctttggagtaataggctatctggtgaagttctaggacacctctctgattggagacaattggaaatcatgaacttgggagaaaatgaattttctgcaa 18109151  T
Q  135 ccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    | ||||||||||   | |||||||| |||||||| ||||||||||||||||||||||||||||| |||||||    
T  18109152 caataccaatcaatttatcacaaaaattagaagttgtcatattgagagctaaccaatttgaaggaactattc 18109223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 19376234 - 19376406
Alignment:
Q  34 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 133  Q
    |||||| ||||||||||||||||| |||||||||  |   ||| |||||  ||  || ||||||  | || |||| ||||||||||||||||||||||||    
T  19376234 gaacctatggagtaataggctatctggtgaagttctagctcacctctctgcttcaaatcaattgcaattcttgaatttgggagaaaatgaattttctgga 19376333  T
Q  134 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    ||||||||||||| |||||||||||||||| |  |||||||||||||||||||  ||||||||||||||||||    
T  19376334 accataccaatcaagatgtcacaaaacttatatttggtcatattgagagctaataaatttgaagggactattc 19376406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 35 - 206
Target Start/End: Original strand, 17950445 - 17950616
Alignment:
Q  35 aacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaa 134  Q
    ||||| ||||||||||||||||| |||||||||  |   ||| ||||| ||| ||  ||||||  |||||||||||||||||||||||||||||||| ||    
T  17950445 aacctttggagtaataggctatctggtgaagttctaggacacctctctgattggagacaattggaaatcatgaacttgggagaaaatgaattttctgcaa 17950544  T
Q  135 ccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    | ||||||||||   | |||||||| |||||||| ||||||||||||||||||||||| ||||| |||||||    
T  17950545 caataccaatcaatttatcacaaaaattagaagttgtcatattgagagctaaccaattagaaggaactattc 17950616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 17942634 - 17942738
Alignment:
Q  102 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggac 201  Q
    ||||||| |||||||||||||| |||| |||||||||||||||||   | |||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17942634 tcatgaatttgggagaaaatgagttttttggaaccataccaatcagcttatcacaaaacttacaagtggtcatattgagagctaaccaatttgaagggac 17942733  T
Q  202 tattc 206  Q
    |||||    
T  17942734 tattc 17942738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 19334621 - 19334793
Alignment:
Q  34 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 133  Q
    |||||| |||||||||||||| || |||||||||  |  |||  ||||| ||| ||| ||||||||| |||| || ||||||||||||||||||||||||    
T  19334621 gaacctatggagtaataggctgtctggtgaagttcaagagcatctctctgattggaaacaattgagagtcataaatttgggagaaaatgaattttctgga 19334720  T
Q  134 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    | ||||||||    |||||||||||||||| || || ||||||||||||| || |||||||||||||||||||    
T  19334721 agcataccaacagggatgtcacaaaacttacaactgatcatattgagagccaatcaatttgaagggactattc 19334793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 109 - 206
Target Start/End: Original strand, 19400413 - 19400510
Alignment:
Q  109 cttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    ||||||||||||||||||||| ||||||||||||||||   | ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  19400413 cttgggagaaaatgaattttcgggaaccataccaatcaacttttcacaaaacttagaagttgtcatactgagagctaaccaatttgaagggactattc 19400510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 107 - 198
Target Start/End: Original strand, 16677895 - 16677986
Alignment:
Q  107 aacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagg 198  Q
    ||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||||||| || ||||||||||||||||| ||||||||    
T  16677895 aacttaggagaaaatgaattttctggaaccataccaattaagatgtcacaaaacttagaagttgttatattgagagctaaccattttgaagg 16677986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 38 - 208
Target Start/End: Original strand, 18103962 - 18104132
Alignment:
Q  38 ctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaacca 137  Q
    ||||||||||||||| | || ||  || || ||||| |||||||||| ||||| ||||||   | ||||||| | ||||||||||||||||||||||| |    
T  18103962 ctgtggagtaataggttgtcggggaaacttccattgtacttctctaacttgaaacaattgcagaccatgaacgtaggagaaaatgaattttctggaacta 18104061  T
Q  138 taccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattctg 208  Q
    ||||| |    ||||||||||||||||||||| ||||||||||||| || |||||||||||||| ||||||    
T  18104062 taccagtaggtatgtcacaaaacttagaagtgatcatattgagagccaatcaatttgaagggacaattctg 18104132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 109 - 206
Target Start/End: Complemental strand, 14895703 - 14895606
Alignment:
Q  109 cttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    |||||||||||||||||||| |||||| ||||||| ||||||||||||| ||||| ||||||| ||||||||| |||||||||||||||||| |||||    
T  14895703 cttgggagaaaatgaattttatggaactataccaaccatgatgtcacaatacttacaagtggttatattgagatctaaccaatttgaagggaatattc 14895606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 19381573 - 19381677
Alignment:
Q  102 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggac 201  Q
    ||||||| ||||||||||||||||||||||||||||||||||| |   | ||| ||||||||||| | |||||||||||||||||||||||||||||||     
T  19381573 tcatgaatttgggagaaaatgaattttctggaaccataccaatgaacttatcagaaaacttagaaattgtcatattgagagctaaccaatttgaagggaa 19381672  T
Q  202 tattc 206  Q
    |||||    
T  19381673 tattc 19381677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 19393761 - 19393933
Alignment:
Q  34 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 133  Q
    |||||| |||||||||| ||| || ||||||||| ||||  || ||||| ||| ||  ||||||   |||||||| |||||| |||||||||||||||||    
T  19393761 gaacctatggagtaataagctgtctggtgaagttccattaaacctctctgattggagacaattgcagatcatgaatttgggaaaaaatgaattttctgga 19393860  T
Q  134 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    | ||||||| |   |||| |||||||||||| |||||||||||||||||| || ||||||||||| |||||||    
T  19393861 aacataccagttgggatgccacaaaacttagtagtggtcatattgagagccaatcaatttgaaggtactattc 19393933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 103 - 200
Target Start/End: Original strand, 19354396 - 19354493
Alignment:
Q  103 catgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaaggga 200  Q
    ||||||||||||||  || |||||||||||||||||||||||||  |||||||||  ||||  |||||||||||||||||| ||||||||||||||||    
T  19354396 catgaacttgggagctaacgaattttctggaaccataccaatcaaaatgtcacaatccttaacagtggtcatattgagagccaaccaatttgaaggga 19354493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 18116645 - 18116749
Alignment:
Q  102 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggac 201  Q
    ||||||||||||||||||||||||||||||||||||||||| | |  ||  ||||| | |||||||| |||||| |||||| |||||||||||||||||     
T  18116645 tcatgaacttgggagaaaatgaattttctggaaccataccattgaacataccacaatatttagaagtagtcatactgagaggtaaccaatttgaagggag 18116744  T
Q  202 tattc 206  Q
    |||||    
T  18116745 tattc 18116749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 44 - 204
Target Start/End: Original strand, 19425309 - 19425469
Alignment:
Q  44 agtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccataccaa 143  Q
    ||||||| ||||||  ||||||||  |  |||| ||||| ||| ||| ||||||   |||||||  |||||||||||| ||||||| |||| ||||||||    
T  19425309 agtaataagctatcctgtgaagttatacagcacctctctgattggaaacaattgcagatcatgattttgggagaaaataaattttcaggaatcataccaa 19425408  T
Q  144 tcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactat 204  Q
    | |   | |||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  19425409 tgaacttatcacaaaaattagaagtcgtcatattgagagctaaccaatttgaagggactat 19425469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 18016703 - 18016806
Alignment:
Q  103 catgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggact 202  Q
    ||||||||||||| |||||||||||||||||| ||||||| |   ||||||||||||||||  |||||||||||||||||| ||  |||||||||||| |    
T  18016703 catgaacttgggaaaaaatgaattttctggaaacataccagtagggatgtcacaaaacttaagagtggtcatattgagagccaataaatttgaagggatt 18016802  T
Q  203 attc 206  Q
    ||||    
T  18016803 attc 18016806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 19352073 - 19352176
Alignment:
Q  103 catgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggact 202  Q
    |||||||||||||||||||||||||||||||| ||||||  |   ||||||||||||||||| |||||||||||| ||||| ||  |||||||||||| |    
T  19352073 catgaacttgggagaaaatgaattttctggaaacataccggtagggatgtcacaaaacttagtagtggtcatatttagagccaataaatttgaagggatt 19352172  T
Q  203 attc 206  Q
    ||||    
T  19352173 attc 19352176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 137 - 206
Target Start/End: Original strand, 19439359 - 19439428
Alignment:
Q  137 ataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    |||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||| |||||||    
T  19439359 ataccaatcatgatgtcacaaaacttaggagtggtaatattgagagataaccaatttgaaggaactattc 19439428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 206
Target Start/End: Complemental strand, 17726924 - 17726753
Alignment:
Q  35 aacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaa 134  Q
    ||||| |||||||||||||| || |||||||||  |   ||| ||||| ||||||| ||||||  |  ||| |  |||||||||||||||||||||||||    
T  17726924 aacctatggagtaataggctgtctggtgaagttctaggacacctctctgatttgaaacaattgcaacacattattttgggagaaaatgaattttctggaa 17726825  T
Q  135 ccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
     ||||||| |   |||||||||| |||||||| ||||||||||| ||| ||| || ||||||||| ||||||    
T  17726824 acataccagtagagatgtcacaacacttagaaatggtcatattgggaggtaatcattttgaagggcctattc 17726753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 35 - 206
Target Start/End: Complemental strand, 19028153 - 19027982
Alignment:
Q  35 aacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaa 134  Q
    ||||| |||||||||||||| || |||||||||  |   ||| ||||| ||||||| ||||||  |  ||| |  |||||||||||||||||||||||||    
T  19028153 aacctatggagtaataggctgtctggtgaagttctaggacacctctctgatttgaaacaattgcaacacattattttgggagaaaatgaattttctggaa 19028054  T
Q  135 ccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
     ||||||| |   |||||||||| |||||||| ||||||||||| ||| ||| || ||||||||| ||||||    
T  19028053 acataccagtagagatgtcacaacacttagaaatggtcatattgggaggtaatcattttgaagggcctattc 19027982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 102 - 206
Target Start/End: Original strand, 19461867 - 19461973
Alignment:
Q  102 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatat--tgagagctaaccaatttgaaggg 199  Q
    ||||||||||||||||||||||||||||||||||||||||| | |  ||  ||||| | ||||||||  ||||||  |||||| ||||||||||||||||    
T  19461867 tcatgaacttgggagaaaatgaattttctggaaccataccattgaacataccacaatatttagaagtattcatatactgagaggtaaccaatttgaaggg 19461966  T
Q  200 actattc 206  Q
    | |||||    
T  19461967 agtattc 19461973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 5e-43; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 34 - 206
Target Start/End: Original strand, 15536145 - 15536317
Alignment:
Q  34 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 133  Q
    ||||||||||| ||||||  | || ||||||||| || ||||| |||||  || ||| ||||||  || |||||||||||||||||||||||||||||||    
T  15536145 gaacctgtggaataatagtttgtctggtgaagttccaatgcacctctctgcttcgaaacaattgcaaaccatgaacttgggagaaaatgaattttctgga 15536244  T
Q  134 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||| | ||  |||||||||||| |||||    
T  15536245 accataccaatcatgatgtcacaaaacttagtagtggtcatattgagaaccaataaatttgaagggattattc 15536317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 34 - 206
Target Start/End: Complemental strand, 2709976 - 2709804
Alignment:
Q  34 gaacctgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctgga 133  Q
    |||| ||||||||||||  ||||| ||||||||| || ||||| ||||||||| | |   ||||  |  ||||||| | |||||||||||||||||||||    
T  2709976 gaacttgtggagtaataaactatctggtgaagttccaatgcacctctctaattggtatggattgcaagccatgaacctaggagaaaatgaattttctgga 2709877  T
Q  134 accataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    || |||||||||| |||||| ||| | ||  ||||  ||||||||||||||||||||||| ||||||||||||    
T  2709876 actataccaatcaagatgtcgcaagatttgaaagttctcatattgagagctaaccaatttaaagggactattc 2709804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0648 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0648
Description:

Target: scaffold0648; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 3487 - 3320
Alignment:
Q  39 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 138  Q
    |||||||||||| ||| || |||||||||  |   ||| ||||| ||| ||| ||||||  | ||||||| |||| ||||||||| ||||||||||||||    
T  3487 tgtggagtaataagctgtctggtgaagttctaggacacctctctgattggaaacaattgcaattcatgaatttggaagaaaatgagttttctggaaccat 3388  T
Q  139 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    ||||||||  ||| ||||| | |||||||| |||||||| |||||||||||||| |||||||||||||    
T  3387 accaatcaacatgccacaatatttagaagttgtcatattaagagctaaccaattcgaagggactattc 3320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0640 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: scaffold0640
Description:

Target: scaffold0640; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 206
Target Start/End: Original strand, 6020 - 6187
Alignment:
Q  39 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 138  Q
    |||||||||||| ||| || |||||||||  |   ||| ||||| ||| ||| ||||||  | ||||||| |||| ||||||||| ||||||||||||||    
T  6020 tgtggagtaataagctgtctggtgaagttctaggacacctctctgattggaaacaattgcaattcatgaatttggaagaaaatgagttttctggaaccat 6119  T
Q  139 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    ||||||||  ||| ||||| | |||||||| |||||||| |||||||||||||| |||||||||||||    
T  6120 accaatcaacatgccacaatatttagaagttgtcatattaagagctaaccaattcgaagggactattc 6187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274 (Bit Score: 64; Significance: 4e-28; HSPs: 2)
Name: scaffold0274
Description:

Target: scaffold0274; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 39 - 206
Target Start/End: Complemental strand, 2956 - 2789
Alignment:
Q  39 tgtggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccat 138  Q
    |||||||||||| ||| || |||||||||  |   ||| ||||| ||| ||| ||||||  | ||||||| |||| ||||||||| ||||||||||||||    
T  2956 tgtggagtaataagctgtctggtgaagttctaggacacctctctgattggaaacaattgcaattcatgaatttggaagaaaatgagttttctggaaccat 2857  T
Q  139 accaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagggactattc 206  Q
    ||||||||  ||| ||||| | |||||||| |||||||| |||||||||||||| |||||||||||||    
T  2856 accaatcaacatgccacaatatttagaagttgtcatattaagagctaaccaattcgaagggactattc 2789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0274; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 102 - 198
Target Start/End: Original strand, 21304 - 21400
Alignment:
Q  102 tcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagg 198  Q
    ||||||| |||||||||||||| ||||||||||||||||||||||  ||| ||||| | ||||||||||||||||| |||||||||||||| |||||    
T  21304 tcatgaatttgggagaaaatgagttttctggaaccataccaatcaacatgccacaatatttagaagtggtcatattaagagctaaccaattcgaagg 21400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 6e-27; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 8460164 - 8460321
Alignment:
Q  41 tggagtaataggctatcaggtgaagtttcattgcacttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccatac 140  Q
    ||||||||||||||||| || |||||| |  || || ||| | ||||||| ||||||  ||| || ||||||||||||||| |||||||||||||||| |    
T  8460164 tggagtaataggctatctggcgaagttccggtggacctctttgatttgaaacaattggaaatgattaacttgggagaaaatcaattttctggaaccattc 8460263  T
Q  141 caatcatgatgtcacaaaacttagaagtggtcatattgagagctaaccaatttgaagg 198  Q
    |||| |  |||||||   | ||||||||||||||||||||||| ||||||||||||||    
T  8460264 caatgaacatgtcacggtatttagaagtggtcatattgagagccaaccaatttgaagg 8460321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 182
Target Start/End: Complemental strand, 13666297 - 13666190
Alignment:
Q  75 acttctctaatttgaaccaattgagaatcatgaacttgggagaaaatgaattttctggaaccataccaatcatgatgtcacaaaacttagaagtggtcat 174  Q
    |||||||||| ||||| || |||  || ||||||||| |||||||||||||||  |||||||||| ||||| |||| |||| ||||||  ||||||||||    
T  13666297 acttctctaacttgaaacagttgcaaaccatgaacttaggagaaaatgaatttaatggaaccataacaatcttgatttcaccaaactttcaagtggtcat 13666198  T
Q  175 attgagag 182  Q
    ||||||||    
T  13666197 attgagag 13666190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University