View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_low_35 (Length: 207)
Name: NF18793_low_35
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 35348625 - 35348804
Alignment:
| Q |
18 |
aaatatgtttcagcttgactaaaacaaacccttttcatgtgctcattttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttc |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35348625 |
aaatatttttcagcttgactaaaacaaacccttttcatgtgctcattttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttc |
35348724 |
T |
|
| Q |
118 |
tctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaacttatgacatttagtgttctctccatttgatgatg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35348725 |
tctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaacttatgacatttagtgttctctccatttgatgatg |
35348804 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 2275702 - 2275881
Alignment:
| Q |
18 |
aaatatgtttcagcttgactaaaacaaacccttttcatgtgctcattttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttc |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2275702 |
aaatatttttcagcttgactaaaacaaacccttttcatgtgctcattttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttc |
2275801 |
T |
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| Q |
118 |
tctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaacttatgacatttagtgttctctccatttgatgatg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2275802 |
tctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaacttatgacatttagtgttctctccatttgatgatg |
2275881 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 176; Significance: 5e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 39347193 - 39347372
Alignment:
| Q |
18 |
aaatatgtttcagcttgactaaaacaaacccttttcatgtgctcattttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttc |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39347193 |
aaatatttttcagcttgactaaaacaaacccttttcatgtgctcattttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttc |
39347292 |
T |
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| Q |
118 |
tctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaacttatgacatttagtgttctctccatttgatgatg |
197 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39347293 |
tctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaacttatgacatttagtgttctctccatttgatgatg |
39347372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 4013036 - 4013215
Alignment:
| Q |
18 |
aaatatgtttcagcttgactaaaacaaacccttttcatgtgctcattttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttc |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4013036 |
aaatatttttcagcttgactaaaacaaacccttttcatgtgctcattttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttc |
4013135 |
T |
|
| Q |
118 |
tctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaacttatgacatttagtgttctctccatttgatgatg |
197 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4013136 |
tctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaacttatgacatttagtgttctctccatttgatgatg |
4013215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 130; E-Value: 1e-67
Query Start/End: Original strand, 18 - 167
Target Start/End: Original strand, 25879900 - 25880049
Alignment:
| Q |
18 |
aaatatgtttcagcttgactaaaacaaacccttttcatgtgctcattttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttc |
117 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
25879900 |
aaatatgtttcagcttgactaaaagaaacccttttcatgtgcccattttaagacatatttcctatgaacttatgaaagaggaggtttgactaagtatttc |
25879999 |
T |
|
| Q |
118 |
tctagaaaaaagtgattgtgggtagtagtcatgatttttgaagaacttat |
167 |
Q |
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||||||||||||||| |||| ||||||||||||||||||||||||||||| |
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| T |
25880000 |
tctagaaaaaagtgaatgtgagtagtagtcatgatttttgaagaacttat |
25880049 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 197
Target Start/End: Original strand, 25880077 - 25880105
Alignment:
| Q |
169 |
acatttagtgttctctccatttgatgatg |
197 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
25880077 |
acatttagtgttctctccatttgatgatg |
25880105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 18 - 171
Target Start/End: Complemental strand, 10789500 - 10789346
Alignment:
| Q |
18 |
aaatatgtttcagcttgactaaaacaaacccttttcatgtgctcattttaagacatatttcctatgaacttatgaaagaggagggttgactaagtatttc |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
10789500 |
aaatatgtttcagcttgactaaaagaaacctttttcatgtgcccattttaagacatatttcctatgaacttatgaaagaggaggtttgactaagtatttc |
10789401 |
T |
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| Q |
118 |
tctagaa-aaaagtgattgtgggtagtagtcatgatttttgaagaacttatgaca |
171 |
Q |
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||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
10789400 |
tctagaaaaaaagtgaatgtgggtagtagtcatgatttttgaagaacttatgaca |
10789346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 197
Target Start/End: Complemental strand, 10789321 - 10789293
Alignment:
| Q |
169 |
acatttagtgttctctccatttgatgatg |
197 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
10789321 |
acatttagtgttctctccatttgatgatg |
10789293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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