View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_low_4 (Length: 730)
Name: NF18793_low_4
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 349; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 349; E-Value: 0
Query Start/End: Original strand, 297 - 714
Target Start/End: Original strand, 33927356 - 33927783
Alignment:
| Q |
297 |
ctggttcaataacggtttaaccagttgaaccggttgaaccttgacccgaacatcacaacggtttaacctctggtccaattttaaaaacattggcgaaacc |
396 |
Q |
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| T |
33927356 |
ctggtttaataacggtttaaccggttgaaccggttgaaccttgacccgaacatcacaacggtttaacctctggtccaattttataaacattggcgaaacc |
33927455 |
T |
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| Q |
397 |
ccaagctttcgcacaagatctcgaaactgcacatgaacgcacaacagtttggatgaagttgtgatggag----------agccttaaggaaatcacactc |
486 |
Q |
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| T |
33927456 |
ccaagctttcgcacgagatctcgaaaccgcacatgaacgcacaacagtttggatgaagttgtgatgaagcgacgttaagagccttaaggaaatcacactc |
33927555 |
T |
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| Q |
487 |
aaagttagtaaaaggaaacttaaaccctatatcctcaaaaacaaacgaatacatatgaaacatctccatcttcactccctaaggacattggaggcacacc |
586 |
Q |
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| T |
33927556 |
aaagttagtaaaaggaaacttaaaccctatatcctcaaaaacaaacgaatacatatgaagcatctccatcttcactccctaaggacattggaggcacacc |
33927655 |
T |
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| Q |
587 |
ttctcgccaagcctgcaaggttccacaataacttctgcctcccaaatagtatacgagatatccactttactcctaaaaaatgacaccctcttgttggtta |
686 |
Q |
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| T |
33927656 |
ttctcgccaagcctacaaggttccacaataatatctgcctcccaaatagtatacgagatatccactttactcctaaaaaatgacaccctcttgttggtta |
33927755 |
T |
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| Q |
687 |
caaaaagagagtccaagcagacaacaac |
714 |
Q |
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| T |
33927756 |
cgaaaagagagtccaagcagacaacaac |
33927783 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 142; E-Value: 4e-74
Query Start/End: Original strand, 86 - 238
Target Start/End: Original strand, 33927141 - 33927294
Alignment:
| Q |
86 |
tcctatgtgtgtaatgcatcgtgtgaaaaaaggatgtcatttagggttacaaaaggattgttgaatacaattatattggctataaaagattaattcaatt |
185 |
Q |
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| T |
33927141 |
tcctatgtgtgtaatgcatcgtgtgaaaaaaagatgtcatttagggttacaaaaggattgttgaatacaattatattggctataaaagattaattcaatt |
33927240 |
T |
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| Q |
186 |
gggctataaaagattggtg-aaaaaagtattttggatctataaagtgttggaac |
238 |
Q |
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| T |
33927241 |
gggctataaaagattggtgaaaaaaagtattttggatctataaagtgttggaac |
33927294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 9083470 - 9083428
Alignment:
| Q |
324 |
aaccggttgaaccttgacccgaacatcacaacggtttaacctc |
366 |
Q |
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| T |
9083470 |
aaccgattgaaccttgacccgaatatcacaacgatttaacctc |
9083428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 305 - 389
Target Start/End: Complemental strand, 21744628 - 21744544
Alignment:
| Q |
305 |
ataacggtttaaccagttgaaccggttgaaccttgacccgaacatcacaacggtttaacctctggtccaattttaaaaacattgg |
389 |
Q |
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| T |
21744628 |
ataacggtttaaccggttgaaccgattgaaccatgaaccgaagatctcatcggttcaatctctggttcggctttaaaaacattgg |
21744544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 324 - 366
Target Start/End: Complemental strand, 6414674 - 6414632
Alignment:
| Q |
324 |
aaccggttgaaccttgacccgaacatcacaacggtttaacctc |
366 |
Q |
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| T |
6414674 |
aaccgattgaaccttgacccgaatatcacaacgatttaacctc |
6414632 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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