View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_low_5 (Length: 678)
Name: NF18793_low_5
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_low_5 |
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| [»] scaffold0135 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 113; Significance: 7e-57; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 143 - 397
Target Start/End: Complemental strand, 12073037 - 12072777
Alignment:
| Q |
143 |
attttgtatgcaaaacctgccctttttctcatcacagtaaaaaataagcataagaaagtcattcacaatcctaagca----cagttcacta--attgcaa |
236 |
Q |
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| T |
12073037 |
attttgtatgcaagacctggtctttttcttatcacagtcaagaataagcatatgaaagacatttgcaatcctaagcataagcataaccctcctattgcaa |
12072938 |
T |
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| Q |
237 |
tcataagaatggtcgcacctatgatgaatgttaaaggcaagccaattcttcaaattgaggaagtgtttacgcagtagttttgccttttttgttgtacctt |
336 |
Q |
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| T |
12072937 |
tcataagaatggtcacatctatgacgaacggtagaggcaagccaattcttcaaattgaagaagtgtttacgcagtagttatgccttttttgttgtaccta |
12072838 |
T |
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| Q |
337 |
ttaaatgtcaaatatagtgatgatatatcagtttggctattttatgttttgttgtcctttt |
397 |
Q |
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| T |
12072837 |
ttcaatgtcaaatgcagtgatgatatatcactttggctatctcatgttttgttgtcctttt |
12072777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0135 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0135
Description:
Target: scaffold0135; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 118 - 72
Alignment:
| Q |
21 |
gtgatccaaacagaaacgaacatgaagttatgatagagaaaaggtat |
67 |
Q |
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| T |
118 |
gtgatccaaacggaaacgaacatgaagttatgatagagaagaggtat |
72 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 9202036 - 9201990
Alignment:
| Q |
21 |
gtgatccaaacagaaacgaacatgaagttatgatagagaaaaggtat |
67 |
Q |
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| T |
9202036 |
gtgatccaaacggaaacgaacatgaagttatgatagagaagaggtat |
9201990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 21 - 67
Target Start/End: Complemental strand, 9200274 - 9200228
Alignment:
| Q |
21 |
gtgatccaaacagaaacgaacatgaagttatgatagagaaaaggtat |
67 |
Q |
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| T |
9200274 |
gtgatccaaacgaaaacgaacatgaagttatgatagagaagaggtat |
9200228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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