View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_low_6 (Length: 663)
Name: NF18793_low_6
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_low_6 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 9 - 663
Target Start/End: Complemental strand, 2214970 - 2214331
Alignment:
| Q |
9 |
aaggagtcagctact--atatcttgcatcatgctaggagtcctgcatcgcaagaatagaacgacatgccaaaaagaccgattttgttagcctcgcattgc |
106 |
Q |
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||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2214970 |
aaggagtcagctactgtatatcttgcaacatgctaggagtcatgcatcgcaagaatagaacgacatgccaaaaggaccgattttgttagcctcgcattgc |
2214871 |
T |
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| Q |
107 |
gagccaatgtttcctacaacttaggaaatgtacgcttataaatattgaacccctaggttagtagaaaacatcttttgacgagcacacaaaggcagaaact |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2214870 |
gagccaatgtttcctacaacttaggaaatgtacgcttataaatattgaacccttaggttagtagaaaacatcttttgacgagcacacaaaggcagaaact |
2214771 |
T |
|
| Q |
207 |
caatttcgaaaggattggtgcgatcaaagccattcgggagccaaagaatcatcaactgacgatcttttctcatgtttactttggcgttcttaaacattca |
306 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||| |
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| T |
2214770 |
caatttcgaaaggattggtgcgatcaaagccatttaggagccaaagaatcatcaactgacgatcttttctcatgcttactttggcgttcttaaataatca |
2214671 |
T |
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| Q |
307 |
agggtcatgggttcacctaaaatattaacgagtagtaagtgttgaagagagttactgaccaagacactagcttaactattttgttcaatggtatttaaat |
406 |
Q |
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||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
2214670 |
agggtcatgggctcacctaaaatattaacgag-----------------agttactgaccaagacactagcttaactattttgttcaacggtatttaaat |
2214588 |
T |
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| Q |
407 |
caagtaatcaacaatattttgttcataacttgtagttataatagcttgcatcagtggtgttgtctatgggaatgacatttttcacaacactccttattcc |
506 |
Q |
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| T |
2214587 |
caagtaatcaacaatattttgttcataacttgtagttataatagcttgcatcagtggtgttgtctatgggaatgacatttttcacaaaactcctaattcc |
2214488 |
T |
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| Q |
507 |
tatcattatttttaccaaaagttaatggcttgaaaaggtgcaaagacttttatagcaaccaaatctaggacactagaaatcatggttcgataaactccac |
606 |
Q |
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| T |
2214487 |
tatcattatttttaccaaaaattaatggcttgaaaaggtgcaaagacttttatagcaaccaaatctaggacactagaaatcatggttcgataaactccac |
2214388 |
T |
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| Q |
607 |
ctgtcgtggagacaatagtaccacttcgtcaaccatcatcaatgataattcctattc |
663 |
Q |
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| T |
2214387 |
ctctcgtggagacattagtaccacttcctcaaccatcatcaatgataattcctattc |
2214331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 360
Target Start/End: Original strand, 1595157 - 1595226
Alignment:
| Q |
291 |
cgttcttaaacattcaagggtcatgggttcacctaaaatattaacgagtagtaagtgttgaagagagtta |
360 |
Q |
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| T |
1595157 |
cgttcttaaaccttcaagggttatgggctcacataagatatcaaggagcaacaagtgttgaagagagtta |
1595226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 88 - 261
Target Start/End: Original strand, 31077356 - 31077529
Alignment:
| Q |
88 |
tttgttagcctcgcattgcgagccaatgtttcctacaacttag-gaaatgtacgcttataaatattgaacccctaggttagtagaaaac-atcttttgac |
185 |
Q |
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|||||||| ||||||| ||||| |||| |||||| ||||||| ||||||| || ||||||||| |||||||||||| | | ||||| | ||||| || |
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| T |
31077356 |
tttgttagactcgcatcgcgagtcaat--ttcctaaaacttagagaaatgtgtgcctataaatatggaacccctaggtcaatggaaaaataccttttaac |
31077453 |
T |
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| Q |
186 |
gagcacacaaaggcagaaactcaatttcgaaaggattggtgcgatcaaagccattcgggagccaaagaatcatcaa |
261 |
Q |
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| T |
31077454 |
aagcagacgaaggcataaacatgatttcttaaggattgaagcgatcatagccattcgggagccaaagaattatcaa |
31077529 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 379 - 417
Target Start/End: Original strand, 17838866 - 17838904
Alignment:
| Q |
379 |
taactattttgttcaatggtatttaaatcaagtaatcaa |
417 |
Q |
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| T |
17838866 |
taactattttgttcaaaggtattgaaatcaagtaatcaa |
17838904 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 286 - 370
Target Start/End: Complemental strand, 21489842 - 21489758
Alignment:
| Q |
286 |
tttggcgttcttaaacattcaagggtcatgggttcacctaaaatattaacgagtagtaagtgttgaagagagttactgaccaaga |
370 |
Q |
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| T |
21489842 |
tttggcgttcttaaaccatcaagggttatgggctcaccgaagacattagggagaagtaaccgttgaagagagttagtgaccaaga |
21489758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 352 - 416
Target Start/End: Complemental strand, 19840797 - 19840733
Alignment:
| Q |
352 |
agagagttactgaccaagacactagcttaactattttgttcaatggtatttaaatcaagtaatca |
416 |
Q |
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| T |
19840797 |
agagtgttagtgaccaagacattggcctaactattttgttcaaaagtattggaatcaagtaatca |
19840733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 171 - 262
Target Start/End: Complemental strand, 29572684 - 29572593
Alignment:
| Q |
171 |
aaaacatcttttgacgagcacacaaaggcagaaactcaatttcgaaaggattggtgcgatcaaagccattcgggagccaaagaatcatcaac |
262 |
Q |
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|||||| ||||||||||||| ||||||| |||||| | ||||| |||||||| |||| | | | ||||||||||||| ||||||||||| |
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| T |
29572684 |
aaaacaccttttgacgagcatacaaaggtagaaacacgatttccgaaggattgaagcgaccggaacaattcgggagccaaggaatcatcaac |
29572593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 16802265 - 16802334
Alignment:
| Q |
348 |
ttgaagagagttactgaccaagacactagcttaactattttgttcaatggtatttaaatcaagtaatcaa |
417 |
Q |
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| T |
16802265 |
ttgaagagagttagtgaccaagacattggtctgactattttattcaaaggttttaaaatcaagtaatcaa |
16802334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 348 - 417
Target Start/End: Original strand, 16841551 - 16841620
Alignment:
| Q |
348 |
ttgaagagagttactgaccaagacactagcttaactattttgttcaatggtatttaaatcaagtaatcaa |
417 |
Q |
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| T |
16841551 |
ttgaagagagttagtgaccaagacattggtctgactattttattcaaaggttttaaaatcaagtaatcaa |
16841620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 286 - 394
Target Start/End: Complemental strand, 35948244 - 35948136
Alignment:
| Q |
286 |
tttggcgttcttaaacattcaagggtcatgggttcacctaaaatattaacgagtagtaagtgttgaagagagttactgaccaagacactagcttaactat |
385 |
Q |
| |
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||||| |||||||||| |||||| || ||||| ||| |||| | |||| ||| || || |||||||| |||| ||||||||||| | |||||||||| |
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| T |
35948244 |
tttggtgttcttaaaccttcaagagttatgggctcatctaagacattagggagcagcaataattgaagagtgttagtgaccaagacattggcttaactat |
35948145 |
T |
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| Q |
386 |
tttgttcaa |
394 |
Q |
| |
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|||| |||| |
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| T |
35948144 |
tttgatcaa |
35948136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 347 - 401
Target Start/End: Complemental strand, 42473317 - 42473263
Alignment:
| Q |
347 |
gttgaagagagttactgaccaagacactagcttaactattttgttcaatggtatt |
401 |
Q |
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|||||||||| ||| |||||| |||| |||| |||||||||||||||| |||||| |
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| T |
42473317 |
gttgaagagaattagtgaccatgacattagcctaactattttgttcaaaggtatt |
42473263 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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