View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18793_low_7 (Length: 584)

Name: NF18793_low_7
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18793_low_7
NF18793_low_7
[»] chr7 (4 HSPs)
chr7 (162-350)||(8179563-8179735)
chr7 (491-533)||(8195579-8195621)
chr7 (535-573)||(8195687-8195725)
chr7 (429-463)||(8195493-8195527)
[»] chr2 (2 HSPs)
chr2 (96-260)||(33662450-33662613)
chr2 (92-186)||(33662378-33662468)
[»] chr1 (4 HSPs)
chr1 (92-197)||(20014302-20014403)
chr1 (120-260)||(20014605-20014746)
chr1 (131-188)||(20014268-20014326)
chr1 (96-136)||(20014374-20014414)
[»] chr3 (5 HSPs)
chr3 (47-97)||(47444469-47444519)
chr3 (92-188)||(6524724-6524816)
chr3 (128-172)||(44364931-44364975)
chr3 (131-171)||(6524651-6524691)
chr3 (134-188)||(6524792-6524847)
[»] chr8 (1 HSPs)
chr8 (40-79)||(36130417-36130456)


Alignment Details
Target: chr7 (Bit Score: 87; Significance: 2e-41; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 162 - 350
Target Start/End: Original strand, 8179563 - 8179735
Alignment:
Q  162 ttgtgtaattggaaacttaggatttgaatcatatgttgtcatgtatcatgcagttgttgatatcggtcgtttgaaggagatagatggtttgtattcgtct 261  Q
    |||| ||||| ||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||                  |||||||||    
T  8179563 ttgtttaattagaaacttaggatttgaatcatatgcagtcatgtatcatgcagttgttgatctcggtcgtttg------------------tattcgtct 8179644  T
Q  262 gcaagtactggaacaagcgacaactgtgagcaaacttggtctacaactcgtcaagattcagccagcaaggaaat---gaacttgcactccat 350  Q
    |||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  8179645 gcaagtgctg-aacaagcgacaactgtgagcaaacttggtctacaactcgtcaagattcagccagcaaggaaatgaagaacttgcactccat 8179735  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 491 - 533
Target Start/End: Original strand, 8195579 - 8195621
Alignment:
Q  491 aaaaacaatcaggtagcacatacatttgatgaaattcatttat 533  Q
    ||||||||| |||||||||||||||||| ||||||||||||||    
T  8195579 aaaaacaattaggtagcacatacatttgttgaaattcatttat 8195621  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 535 - 573
Target Start/End: Original strand, 8195687 - 8195725
Alignment:
Q  535 aaatgatttattttttgactattactttttccatcctat 573  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  8195687 aaatgatttattttttgactattactttttccaccctat 8195725  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 429 - 463
Target Start/End: Original strand, 8195493 - 8195527
Alignment:
Q  429 cgttatgagaatgaacttttccgtaaatcaatttt 463  Q
    |||||||||||||||||||||| ||||||||||||    
T  8195493 cgttatgagaatgaacttttccttaaatcaatttt 8195527  T

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Target: chr2 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 96 - 260
Target Start/End: Original strand, 33662450 - 33662613
Alignment:
Q  96 aattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatcatat 195  Q
    ||||||||||||| ||||| ||| ||||||| |||||||||||||||||||| ||||||||||||||||| |||||| |||||||| |||||| ||  ||    
T  33662450 aattggaaaattaagatttcacttatatgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattgaaaacttagaatttgactc--at 33662547  T
Q  196 gttgtcatgtatcatgcagttgttgatatcggtcgtttgaaggagat-agatggtttgtattcgtc 260  Q
    || | | ||||||||||||| ||| || || |||||||||  ||||| ||||||||||||||||||    
T  33662548 gtagccctgtatcatgcagtcgttaatctcagtcgtttgattgagatcagatggtttgtattcgtc 33662613  T

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Target: chr2; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 33662378 - 33662468
Alignment:
Q  92 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggattt 186  Q
    ||||| ||||||||| |||||||||||    |||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||| |||||    
T  33662378 tttaatttggaaaataaggatttgact----tgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattggaaaattaagattt 33662468  T

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Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 92 - 197
Target Start/End: Original strand, 20014302 - 20014403
Alignment:
Q  92 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatc 191  Q
    ||||| |||||||||||||||||||||    |||| |||||||||||||||||||| ||||||||||||||||| |||||||||| ||| || |||| ||    
T  20014302 tttaatttggaaaattaggatttgact----tgtagtgcatttaatttaatttaatcaattgtgtcgtttttgtttaattggaaaattaagagttgactc 20014397  T
Q  192 atatgt 197  Q
    ||||||    
T  20014398 atatgt 20014403  T

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Target: chr1; HSP #2
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 120 - 260
Target Start/End: Original strand, 20014605 - 20014746
Alignment:
Q  120 atatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttgaatcatatgttgtcatgtatcatgcagttgtt 219  Q
    ||||||| |||||||||||||||||||| |||||  |||||||||| |||||  ||||||||||||||| |||  ||| | ||||||||||||| | |||    
T  20014605 atatgtagtgcatttaatttaatttaatcaattgcttcgtttttgtttaattaaaaacttaggatttgactcaagtgtagccatgtatcatgcaatcgtt 20014704  T
Q  220 gatatcggtcgtttgaaggagat-agatggtttgtattcgtc 260  Q
     || ||| |||||||| ||||||  ||||| |||||||||||    
T  20014705 aatctcgatcgtttgatggagatctgatggattgtattcgtc 20014746  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 131 - 188
Target Start/End: Original strand, 20014268 - 20014326
Alignment:
Q  131 atttaatttaatttaataaattgtgtcgtttttgtgtaa-ttggaaacttaggatttga 188  Q
    ||||||||||||||||| |||||||  |||||||| ||| ||||||| |||||||||||    
T  20014268 atttaatttaatttaatcaattgtgatgtttttgtttaatttggaaaattaggatttga 20014326  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 96 - 136
Target Start/End: Original strand, 20014374 - 20014414
Alignment:
Q  96 aattggaaaattaggatttgactcatatgtaatgcatttaa 136  Q
    ||||||||||||| || |||||||||||||| |||||||||    
T  20014374 aattggaaaattaagagttgactcatatgtagtgcatttaa 20014414  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 47 - 97
Target Start/End: Original strand, 47444469 - 47444519
Alignment:
Q  47 aatttcaaattaacattagttagcaaagcaaaagtagtcaacgtctttaaa 97  Q
    |||||||||| |||||||||||||||||||||||| |||||||||||||||    
T  47444469 aatttcaaatcaacattagttagcaaagcaaaagtggtcaacgtctttaaa 47444519  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 92 - 188
Target Start/End: Complemental strand, 6524816 - 6524724
Alignment:
Q  92 tttaaattggaaaattaggatttgactcatatgtaatgcatttaatttaatttaataaattgtgtcgtttttgtgtaattggaaacttaggatttga 188  Q
    ||||| |||||||||||||||||||||    | || |||||||||||||| ||||| |||||||||||||||||  |||||| || ||| |||||||    
T  6524816 tttaatttggaaaattaggatttgact----tttagtgcatttaatttaacttaatcaattgtgtcgtttttgttcaattggtaaattaagatttga 6524724  T

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Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 128 - 172
Target Start/End: Original strand, 44364931 - 44364975
Alignment:
Q  128 tgcatttaatttaatttaataaattgtgtcgtttttgtgtaattg 172  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||    
T  44364931 tgcatttaatttaatttaatcaattgtgtcgtttttgtttaattg 44364975  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 6524691 - 6524651
Alignment:
Q  131 atttaatttaatttaataaattgtgtcgtttttgtgtaatt 171  Q
    ||||||||||||||||| ||||||||||||||||| |||||    
T  6524691 atttaatttaatttaatcaattgtgtcgtttttgtttaatt 6524651  T

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Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 188
Target Start/End: Complemental strand, 6524847 - 6524792
Alignment:
Q  134 taatttaatttaataaattgtgtcgtttttgtgtaa-ttggaaacttaggatttga 188  Q
    |||||||||||||| |||||||| |||||||| ||| ||||||| |||||||||||    
T  6524847 taatttaatttaatcaattgtgttgtttttgtttaatttggaaaattaggatttga 6524792  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 40 - 79
Target Start/End: Original strand, 36130417 - 36130456
Alignment:
Q  40 attgatgaatttcaaattaacattagttagcaaagcaaaa 79  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  36130417 attgatgaatttcaaattaacattaattagcaaagcaaaa 36130456  T

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