View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18793_low_8 (Length: 583)
Name: NF18793_low_8
Description: NF18793
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18793_low_8 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 505; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 505; E-Value: 0
Query Start/End: Original strand, 16 - 583
Target Start/End: Original strand, 38030447 - 38031013
Alignment:
| Q |
16 |
cagtcatgaaggttgccttgctctcccactcatagggaaggtaatgggcaggtaataaagcactcctcgtcccaacatctgcagcggaaaaacatttgta |
115 |
Q |
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| T |
38030447 |
cagtcatgaaggttgccttgctctcccactcatagggaaggtaatgggcaggtaataaagcactcctcgtcccaacatctgcagcggaaaaacatttgta |
38030546 |
T |
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| Q |
116 |
ttcaaatccaacgtagattttatagttgtcgttgaagcggaatacaactgaacaatgttttgagtttggcagaatgttttattaggctgataagtttaaa |
215 |
Q |
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| T |
38030547 |
ttcaaatccaacgtagattttatagttgtcgttgaagcggaatacaaccgaacaatgtt--gagtttggcagaatgttttattaggctgataaatttaaa |
38030644 |
T |
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| Q |
216 |
attggctggataataataaatttacaataannnnnnn-caaagactaaaatatgtttcaaattttgctcgctcaggttgtatattcacagcacaatcgcc |
314 |
Q |
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| T |
38030645 |
attggctggataataataaatttacaataattttttttcaaagactaaaatatgtttcaaattttgctcgctcaggttgtatattcacagcacaatcgcc |
38030744 |
T |
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| Q |
315 |
ttcaacacaagtatagtaagacaaattaaagatatttgaattttgataataagatcctatttctcgcaaaggataaattcatcaatccaccgcgacagtg |
414 |
Q |
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| T |
38030745 |
ttcaacacaaggatagtaagacagattaaagaaatttgaattttgataataagatcctatttctcgcaaaggataaattcatcaatccaccgcgacagtg |
38030844 |
T |
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| Q |
415 |
ttttgtagtcaaccctcttatgttaactttctctatctatcctaaaactttcatgattttcggaaatgttggtttttcattggctagtttgtgtttagca |
514 |
Q |
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| T |
38030845 |
ttttgtagtcaaccctcttatgttaactttctctatctatcctaaaactttcatgattttcggaaatgttggtttttcattggctagtttgtctttagca |
38030944 |
T |
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| Q |
515 |
atcaaattacgaagatgcatttgctatatatagcatcgcagttttaataaacacatatatactttattt |
583 |
Q |
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| T |
38030945 |
atcaaattacgaagatgcatttgctatatatagcatcgcagttttaataaacacatatatactttattt |
38031013 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 24 - 115
Target Start/End: Original strand, 38024035 - 38024121
Alignment:
| Q |
24 |
aaggttgccttgctctcccactcatagggaaggtaatgggcaggtaataaagcactcctcgtcccaacatctgcagcggaaaaacatttgta |
115 |
Q |
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| T |
38024035 |
aaggttgccttgctc--ccagtcataaggaaggtaatgggcaggtaataaagca---ctcgtcccaacatgtgcagttgaaaaatatttgta |
38024121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 312; Significance: 1e-175; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 16 - 375
Target Start/End: Original strand, 21606442 - 21606802
Alignment:
| Q |
16 |
cagtcatgaaggttgccttgctctcccactcatagggaaggtaatgggcaggtaataaagcactcctcgtcccaacatctgcagcggaaaaacatttgta |
115 |
Q |
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| T |
21606442 |
cagtcatgaaggttgccttgctctcccactcatagggaaggtaatgggcaggtaataaagcactcctcgtcccaacatctgcagcggaaaaacatttgta |
21606541 |
T |
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| Q |
116 |
ttcaaatccaacgtagattttatagttgtcgttgaagcggaatacaactgaacaatgttttgagtttggcagaatgttttattaggctgataagtttaaa |
215 |
Q |
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| T |
21606542 |
ttcaaatccaacgtagattttatagttgtcgttgaagcggaatacaaccgaacaatgttttgagtttggcagaatgttttattaggctgataaatttaaa |
21606641 |
T |
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| Q |
216 |
attggctggataataataaatttacaataa-nnnnnnncaaagactaaaatatgtttcaaattttgctcgctcaggttgtatattcacagcacaatcgcc |
314 |
Q |
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| T |
21606642 |
attggctggataataataaatttacaataattttttttcaaagactaaaatatgtttcaaattttgctcgctcaggttatatattcacagcacaatcgcc |
21606741 |
T |
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| Q |
315 |
ttcaacacaagtatagtaagacaaattaaagatatttgaattttgataataagatcctatt |
375 |
Q |
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| T |
21606742 |
ttcaacacaagtatagtaagacagattaaagaaatttgaattttgataataagatcctatt |
21606802 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 400 - 583
Target Start/End: Original strand, 21606802 - 21606985
Alignment:
| Q |
400 |
tccaccgcgacagtgttttgtagtcaaccctcttatgttaactttctctatctatcctaaaactttcatgattttcggaaatgttggtttttcattggct |
499 |
Q |
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| T |
21606802 |
tccaccgcgacagtgttttgtagtcaaccctcttatgttaactttctctatctatcctaaaactttcatgatttttggaaatgttggtttttcattggct |
21606901 |
T |
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| Q |
500 |
agtttgtgtttagcaatcaaattacgaagatgcatttgctatatatagcatcgcagttttaataaacacatatatactttattt |
583 |
Q |
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| T |
21606902 |
agtttgtcttcagcaatcaaattacgaagatgcatttgctatatatagcatcgcagttttaataaacacatatatactttattt |
21606985 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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