View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18794_high_3 (Length: 416)
Name: NF18794_high_3
Description: NF18794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18794_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 2 - 399
Target Start/End: Original strand, 45757690 - 45758087
Alignment:
| Q |
2 |
atgatgagcactaaaatatattgaagataaatccaaatatatactgccaagatgaatatacaagcggcaaatatcatggtatatctgttggcaggatatg |
101 |
Q |
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| T |
45757690 |
atgatgagcactaaaatatattgaagataaatccaaatatatactgccaagatgaatatacaagaggcaaatatcatggtatatctgttggcaggatatg |
45757789 |
T |
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| Q |
102 |
aagcatttccaaacatcaacataatgatcagattcaacaaactcttgtaaatcatgaaactctgattcaattccaataatgtatagtagttgaagtttga |
201 |
Q |
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| T |
45757790 |
aagcatttccaaacatcaacataatgatcagattcaacaaactcttgtaaatcatgaaactctgattcaattccaataatgtatagtagttgaagtttga |
45757889 |
T |
|
| Q |
202 |
ttattagtggcagaatagaaagggaagtaaagtaataatggttgcagttgcacaaattcagacgtaaaggttgaataaggggaagctatgacatgtactc |
301 |
Q |
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| T |
45757890 |
ttattagtggcagaatagaaagggaagtaaagtaataatggttgcagttgcacaaattcagacgtaaaggttgaataaggggaagctatgacatgtactc |
45757989 |
T |
|
| Q |
302 |
catggcaaaaaatgaaggaccacgaaaagcatgtggcttgttctttgtccataacatgggtgttgtcacaatccatgatactctgtcacattaaaaac |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45757990 |
catggcaaaaaatgaaggaccacgaaaagcatgtggcttgttctttgtccataacatgggtgttgtcacaatccatgatactctgtcacattaaaaac |
45758087 |
T |
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