View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18794_high_4 (Length: 333)
Name: NF18794_high_4
Description: NF18794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18794_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 301; Significance: 1e-169; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 16 - 316
Target Start/End: Original strand, 43255458 - 43255758
Alignment:
| Q |
16 |
atttgctgtaggaagtggagctaaattttttggacggaaagggataatgtcgcaatcagatgaaagagcttttcctgactcaggaaaggtagattctgtt |
115 |
Q |
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| T |
43255458 |
atttgctgtaggaagtggagctaaattttttggacggaaagggataatgtcgcaatcagatgaaagagcttttcctgactcaggaaaggtagattctgtt |
43255557 |
T |
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| Q |
116 |
ggagaagtagcagatgagtttaagagtgatgacaacgaaaaagaagtacaactcagggagctgcaaaatgatatgcatgttggaatgaatgctaaaccaa |
215 |
Q |
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| T |
43255558 |
ggagaagtagcagatgagtttaagagtgatgacaacgaaaaagaagtacaactcagggagctgcaaaatgatatgcatgttggaatgaatgctaaaccaa |
43255657 |
T |
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| Q |
216 |
aattctcattgaaggtgaaggacgaggatattgaagaaaacggaattaaagagaagggaaacatcaagatgcagaaaaatgtggtggagagtggcgtaaa |
315 |
Q |
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| T |
43255658 |
aattctcattgaaggtgaaggacgaggatattgaagaaaacggaattaaagagaagggaaacatcaagatgcagaaaaatgtggtggagagtggcgtaaa |
43255757 |
T |
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| Q |
316 |
t |
316 |
Q |
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| T |
43255758 |
t |
43255758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 30 - 168
Target Start/End: Original strand, 43257614 - 43257752
Alignment:
| Q |
30 |
gtggagctaaattttttggacggaaagggataatgtcgcaatcagatgaaagagcttttcctgactcaggaaaggtagattctgttggagaagtagcaga |
129 |
Q |
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| T |
43257614 |
gtggagataaattctttggacggaaagggatgctatcacatcccgatgaaagagcttttcctgactcaggaaaggtagattctgttggagaagtaacaaa |
43257713 |
T |
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| Q |
130 |
tgagtttaagagtgatgacaacgaaaaagaagtacaact |
168 |
Q |
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| T |
43257714 |
tgagtttaaaagtaatgacaaagaaaaagaagtacaact |
43257752 |
T |
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