View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18794_low_2 (Length: 508)

Name: NF18794_low_2
Description: NF18794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18794_low_2
NF18794_low_2
[»] chr7 (3 HSPs)
chr7 (11-491)||(38041164-38041651)
chr7 (91-159)||(2767504-2767572)
chr7 (108-159)||(24250542-24250593)
[»] chr6 (2 HSPs)
chr6 (228-492)||(31837512-31837773)
chr6 (119-159)||(28867154-28867194)
[»] chr5 (2 HSPs)
chr5 (82-157)||(43579012-43579087)
chr5 (82-156)||(43590976-43591050)
[»] scaffold0122 (1 HSPs)
scaffold0122 (117-159)||(18603-18645)
[»] chr8 (1 HSPs)
chr8 (118-164)||(24068214-24068260)
[»] chr3 (1 HSPs)
chr3 (70-159)||(48897730-48897819)


Alignment Details
Target: chr7 (Bit Score: 420; Significance: 0; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 11 - 491
Target Start/End: Complemental strand, 38041651 - 38041164
Alignment:
Q  11 aagaatatttaacgatggtataatttttacacaacattctttaat--tatatccatcaactcattgattttcagccaataataaatctaagtggttgaaa 108  Q
    |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38041651 aagaatatttaacgatggtataatttttacacaacattctttaatattatatccatcaactcattgattttcagccaataacaaatctaagtggttgaaa 38041552  T
Q  109 tctttttgtgatcaattcttgatataatctctttagataattagcaatgcttgttttgtttactctctttatcgattatttccatatccttggattttta 208  Q
    |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38041551 tcttttcgcgatcaattcttgatataatctctttagataattagcaatgcttgttttgtttactctctttatcgattatttccatatccttggattttta 38041452  T
Q  209 ttttctttctaaatatcgcattaatcctccacatacacatttacatgtatttcaacaatacactaagttataatttgtatctttaaaatttggaatttct 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38041451 ttttctttctaaatatcgcattaatcctccacatacacatttacatgtatttcaacaatacactaagttataatttgtatctttaaaatttggaatttct 38041352  T
Q  309 gttaaatattccaacagaatctagtccatctgttcttcgaagcagcacatactttggtgaaaattatggttgattttttatctattgtatggcattaaca 408  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38041351 gttaaatattccaacagaatcaagtccatctgttcttcgaagcagcacatactttggtgaaaattatggttgattttttatctattgtatggcattaaca 38041252  T
Q  409 atttcgctcgccaaatgtcac----atatacctggtgataatgtga-aatttgtgtgacaacttcgtgaactacgtttgcaaacatat 491  Q
    |||||||| ||||||||||||    |||||||||||||| ||||||   |||||||||||||||||||||||||||||||||||||||    
T  38041251 atttcgcttgccaaatgtcacatctatatacctggtgatcatgtgattttttgtgtgacaacttcgtgaactacgtttgcaaacatat 38041164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 2767572 - 2767504
Alignment:
Q  91 aaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaatgct 159  Q
    |||| ||| ||||||||||| || ||||||| |||||||||||||||||| || |||| ||||||||||    
T  2767572 aaatttaattggttgaaatcattctgtgatccattcttgatataatctctctatataaatagcaatgct 2767504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 24250542 - 24250593
Alignment:
Q  108 atctttttgtgatcaattcttgatataatctctttagataattagcaatgct 159  Q
    |||||||  |||||||||||||||| ||||||||||||||  ||||||||||    
T  24250542 atcttttcttgatcaattcttgataaaatctctttagatagatagcaatgct 24250593  T

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Target: chr6 (Bit Score: 101; Significance: 8e-50; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 228 - 492
Target Start/End: Complemental strand, 31837773 - 31837512
Alignment:
Q  228 attaatcctccacatacacat--ttacatgtatttcaacaatacactaagttataatttgtatctttaaaatttggaatttctgttaaatattccaacag 325  Q
    |||||||||||| ||||| ||  ||||||||||||||| ||||||||| |||||||||||||| | | |||||||| ||||| ||||||||||||| |||    
T  31837773 attaatcctccatatacatatatttacatgtatttcaagaatacactatgttataatttgtatatatgaaatttgggatttcagttaaatattccagcag 31837674  T
Q  326 aatctagtccatctgttcttcgaagcagcac----atactttggtgaaaattatggttga-ttttttatctattgtatggcatt-aacaatttcgctcgc 419  Q
    ||  |||||||  |||||||||||| |||||    |||||||||||||||||| |||||| ||||||||||||||||||| ||| |||||||||||||||    
T  31837673 aacttagtcca-gtgttcttcgaagtagcacatgaatactttggtgaaaattacggttgatttttttatctattgtatggtattaaacaatttcgctcgc 31837575  T
Q  420 caaatgtcacatatacctggtgataatgtgaaatttgtgtgacaacttcgtgaactacgtttgcaaacatatt 492  Q
    |||||||||||   ||       |||||||||||||||| ||  ||||||||||||||||||||||| |||||    
T  31837574 caaatgtcaca---ac-------taatgtgaaatttgtgagatcacttcgtgaactacgtttgcaaatatatt 31837512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 159
Target Start/End: Complemental strand, 28867194 - 28867154
Alignment:
Q  119 atcaattcttgatataatctctttagataattagcaatgct 159  Q
    |||||||||||||| ||||||||||||||| || |||||||    
T  28867194 atcaattcttgataaaatctctttagataaataacaatgct 28867154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 82 - 157
Target Start/End: Original strand, 43579012 - 43579087
Alignment:
Q  82 gccaataataaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaatg 157  Q
    |||||||| |||  ||| ||| || |||||||| ||||||||||||||||||||| ||  ||||||| ||||||||    
T  43579012 gccaataagaaaattaattggctggaatcttttcgtgatcaattcttgatataatatcgctagataaatagcaatg 43579087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 82 - 156
Target Start/End: Complemental strand, 43591050 - 43590976
Alignment:
Q  82 gccaataataaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaat 156  Q
    |||||||| ||| |||| ||| || |||||||| ||||||||||||| ||||||||||   |||||| |||||||    
T  43591050 gccaataagaaaactaattggctggaatcttttcgtgatcaattcttaatataatctcgcaagataaatagcaat 43590976  T

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Target: scaffold0122 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 117 - 159
Target Start/End: Complemental strand, 18645 - 18603
Alignment:
Q  117 tgatcaattcttgatataatctctttagataattagcaatgct 159  Q
    |||||||||||| ||| ||||||||||||||| ||||||||||    
T  18645 tgatcaattcttaataaaatctctttagataaatagcaatgct 18603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 118 - 164
Target Start/End: Original strand, 24068214 - 24068260
Alignment:
Q  118 gatcaattcttgatataatctctttagataattagcaatgcttgttt 164  Q
    ||||||||||||||| ||||||| ||||||| |||||||||| ||||    
T  24068214 gatcaattcttgataaaatctctctagataaatagcaatgctcgttt 24068260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 70 - 159
Target Start/End: Original strand, 48897730 - 48897819
Alignment:
Q  70 cattgattttcagccaataataaatctaagtggttgaaatctttttgtgatcaattcttgatataatctctttagataattagcaatgct 159  Q
    |||||||||||  | ||||| |||| ||| | | |||||  ||||| |||| ||||||||||| ||||||| ||||||| ||||||||||    
T  48897730 cattgattttcgacaaataacaaatttaacttgctgaaacatttttttgattaattcttgataaaatctctctagataaatagcaatgct 48897819  T

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