View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18794_low_3 (Length: 491)

Name: NF18794_low_3
Description: NF18794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18794_low_3
NF18794_low_3
[»] chr3 (23 HSPs)
chr3 (141-482)||(38469068-38469417)
chr3 (141-370)||(51128991-51129220)
chr3 (141-370)||(47141378-47141607)
chr3 (139-370)||(1527529-1527760)
chr3 (139-362)||(47696997-47697220)
chr3 (139-370)||(52691925-52692156)
chr3 (370-482)||(51125232-51125344)
chr3 (370-482)||(52692664-52692776)
chr3 (219-317)||(33025798-33025896)
chr3 (219-317)||(42074392-42074490)
chr3 (219-318)||(53687376-53687475)
chr3 (219-317)||(51229727-51229825)
chr3 (219-288)||(51407464-51407533)
chr3 (221-317)||(48181071-48181167)
chr3 (237-315)||(11263709-11263787)
chr3 (219-317)||(42274518-42274616)
chr3 (219-317)||(45150598-45150696)
chr3 (219-315)||(48254506-48254602)
chr3 (219-317)||(28182370-28182468)
chr3 (252-314)||(30809842-30809904)
chr3 (219-317)||(31813401-31813499)
chr3 (252-314)||(44610827-44610889)
chr3 (252-314)||(44328692-44328754)
[»] chr2 (23 HSPs)
chr2 (136-370)||(40254339-40254573)
chr2 (141-370)||(14379660-14379889)
chr2 (140-356)||(31786698-31786914)
chr2 (141-357)||(44282494-44282710)
chr2 (150-364)||(31686770-31686984)
chr2 (370-482)||(14380229-14380341)
chr2 (370-482)||(14036738-14036850)
chr2 (370-482)||(13896121-13896233)
chr2 (145-349)||(2443663-2443868)
chr2 (370-483)||(5916793-5916906)
chr2 (370-483)||(36311719-36311832)
chr2 (219-317)||(37640761-37640859)
chr2 (219-317)||(37996718-37996816)
chr2 (222-317)||(3739048-3739143)
chr2 (219-317)||(7473518-7473616)
chr2 (219-317)||(17480814-17480912)
chr2 (253-314)||(37551592-37551653)
chr2 (219-317)||(14033372-14033470)
chr2 (219-317)||(43342277-43342375)
chr2 (219-317)||(13892752-13892850)
chr2 (219-317)||(14032877-14032975)
chr2 (219-317)||(35458185-35458283)
chr2 (256-314)||(44002684-44002742)
[»] chr4 (29 HSPs)
chr4 (139-370)||(31431012-31431243)
chr4 (141-370)||(24038038-24038267)
chr4 (141-370)||(24246540-24246769)
chr4 (141-370)||(39382934-39383163)
chr4 (142-370)||(18140375-18140603)
chr4 (142-370)||(49127588-49127816)
chr4 (370-482)||(24036063-24036175)
chr4 (370-482)||(56560630-56560742)
chr4 (53-141)||(4114213-4114301)
chr4 (370-482)||(52056842-52056954)
chr4 (154-340)||(51834225-51834412)
chr4 (373-463)||(51806037-51806127)
chr4 (370-483)||(16565661-16565774)
chr4 (219-317)||(53404111-53404209)
chr4 (219-317)||(45105807-45105904)
chr4 (219-317)||(52058252-52058350)
chr4 (224-317)||(30418397-30418490)
chr4 (219-315)||(22606362-22606458)
chr4 (217-287)||(28911579-28911649)
chr4 (219-317)||(38767791-38767889)
chr4 (220-317)||(53663635-53663732)
chr4 (219-315)||(28963870-28963966)
chr4 (252-314)||(16203097-16203159)
chr4 (252-314)||(39732843-39732905)
chr4 (252-314)||(50523874-50523936)
chr4 (21-54)||(4114363-4114396)
chr4 (219-291)||(49723784-49723855)
chr4 (252-314)||(5937846-5937908)
chr4 (226-291)||(26457118-26457183)
[»] chr8 (21 HSPs)
chr8 (140-370)||(30984278-30984508)
chr8 (141-370)||(30210394-30210623)
chr8 (140-370)||(34774324-34774554)
chr8 (370-482)||(193509-193621)
chr8 (370-482)||(721113-721225)
chr8 (370-482)||(882220-882332)
chr8 (370-482)||(30210706-30210818)
chr8 (370-482)||(30983072-30983184)
chr8 (185-295)||(629476-629586)
chr8 (370-482)||(44240244-44240356)
chr8 (282-370)||(189774-189862)
chr8 (282-370)||(717378-717466)
chr8 (282-370)||(878485-878573)
chr8 (219-317)||(35164381-35164474)
chr8 (219-317)||(35802344-35802442)
chr8 (217-287)||(924099-924169)
chr8 (140-184)||(308871-308915)
chr8 (219-317)||(45276403-45276501)
chr8 (219-317)||(8416662-8416760)
chr8 (219-291)||(36821653-36821725)
chr8 (252-314)||(3590107-3590169)
[»] chr7 (15 HSPs)
chr7 (140-370)||(31012379-31012609)
chr7 (139-370)||(25341421-25341652)
chr7 (196-327)||(41064585-41064717)
chr7 (219-317)||(25970433-25970531)
chr7 (217-314)||(39857075-39857172)
chr7 (370-482)||(37638825-37638937)
chr7 (218-317)||(37371078-37371177)
chr7 (219-317)||(14999868-14999966)
chr7 (219-317)||(30825190-30825288)
chr7 (221-317)||(26826384-26826480)
chr7 (219-317)||(25472765-25472863)
chr7 (370-482)||(10372565-10372677)
chr7 (219-317)||(12909229-12909327)
chr7 (219-317)||(43664814-43664912)
chr7 (252-314)||(19544572-19544634)
[»] chr5 (24 HSPs)
chr5 (136-370)||(3260815-3261049)
chr5 (142-370)||(29542418-29542646)
chr5 (141-370)||(42663356-42663585)
chr5 (141-357)||(33114956-33115172)
chr5 (142-357)||(14082814-14083029)
chr5 (370-482)||(27738412-27738524)
chr5 (370-482)||(33232579-33232691)
chr5 (370-482)||(7071881-7071993)
chr5 (370-483)||(22481637-22481750)
chr5 (217-314)||(2526282-2526379)
chr5 (219-291)||(53693-53765)
chr5 (219-317)||(27739351-27739449)
chr5 (221-318)||(8958502-8958599)
chr5 (219-316)||(37066560-37066657)
chr5 (219-316)||(41040137-41040234)
chr5 (370-405)||(21022303-21022338)
chr5 (219-317)||(7073275-7073373)
chr5 (219-317)||(21022632-21022730)
chr5 (219-317)||(33229204-33229302)
chr5 (219-317)||(39236896-39236994)
chr5 (252-291)||(40979452-40979491)
chr5 (252-314)||(10900165-10900227)
chr5 (219-317)||(19356501-19356599)
chr5 (252-314)||(19375409-19375471)
[»] chr1 (24 HSPs)
chr1 (141-370)||(38843151-38843380)
chr1 (140-370)||(51488472-51488702)
chr1 (141-370)||(7593180-7593409)
chr1 (141-370)||(50979212-50979441)
chr1 (142-370)||(5271480-5271708)
chr1 (139-370)||(27000243-27000474)
chr1 (141-357)||(38627538-38627754)
chr1 (141-358)||(26821382-26821599)
chr1 (142-357)||(36496041-36496256)
chr1 (140-344)||(15353227-15353431)
chr1 (370-482)||(50978788-50978900)
chr1 (370-482)||(46407610-46407722)
chr1 (145-327)||(27575898-27576081)
chr1 (370-482)||(35606451-35606564)
chr1 (218-317)||(47655888-47655987)
chr1 (370-483)||(35569755-35569868)
chr1 (217-287)||(11051192-11051262)
chr1 (252-314)||(1762251-1762313)
chr1 (219-317)||(6706132-6706230)
chr1 (219-317)||(13509940-13510038)
chr1 (217-314)||(11829075-11829172)
chr1 (219-317)||(46406421-46406519)
chr1 (219-317)||(35604814-35604912)
chr1 (217-282)||(46033716-46033781)
[»] chr6 (12 HSPs)
chr6 (141-370)||(30018773-30019002)
chr6 (370-482)||(30019342-30019454)
chr6 (370-482)||(21515552-21515664)
chr6 (145-327)||(31746179-31746359)
chr6 (370-483)||(16547578-16547691)
chr6 (217-314)||(4146810-4146907)
chr6 (370-482)||(17830618-17830730)
chr6 (219-317)||(21517357-21517455)
chr6 (252-291)||(30134180-30134219)
chr6 (219-317)||(365591-365689)
chr6 (252-314)||(20838498-20838560)
chr6 (252-314)||(27825057-27825119)
[»] scaffold0069 (1 HSPs)
scaffold0069 (219-287)||(16815-16883)
[»] scaffold0394 (1 HSPs)
scaffold0394 (370-482)||(6451-6563)
[»] scaffold0006 (1 HSPs)
scaffold0006 (220-317)||(91535-91634)
[»] scaffold0808 (1 HSPs)
scaffold0808 (219-317)||(4090-4188)
[»] scaffold0068 (1 HSPs)
scaffold0068 (219-315)||(37697-37791)


Alignment Details
Target: chr3 (Bit Score: 264; Significance: 1e-147; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 264; E-Value: 1e-147
Query Start/End: Original strand, 141 - 482
Target Start/End: Original strand, 38469068 - 38469417
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  38469068 agcctctgtttggtttggcttttgcaaagccagaatcaattatggagcatttcaaaagcaattctgcaatatttaacatgtttggtttaccttttcaaaa 38469167  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| ||||    
T  38469168 tagtttttatcctccaaaagcaattctagttgaagctacaattcttagcttcttactttcctataatcaattctacaccctcaattctattaattccatc 38469267  T
Q  341 cctgccctcattaatttttctaacccttcttcaa---atagttgtc-----gcaacaatggctatacacaactttatccgaaggaaggcagaaaatgata 432  Q
    |||||||||||||||||||||||||||||| |||   |   || ||     |||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38469268 cctgccctcattaatttttctaacccttctccaaccgaattttttctttctgcaacagtggctatacacaactttatccgaaggaaggcagaaaatgata 38469367  T
Q  433 tggattttaatgtttatgaagatgaaagcacagtcattcatcatgatgat 482  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38469368 tggattttaatgtttatgaagatgaaagcacagtcattcatcatgatgat 38469417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 141 - 370
Target Start/End: Complemental strand, 51129220 - 51128991
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51129220 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 51129121  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  51129120 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 51129021  T
Q  341 cctgccctcattaatttttctaacccttct 370  Q
    ||||||||||||||||||||||||||||||    
T  51129020 cctgccctcattaatttttctaacccttct 51128991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 141 - 370
Target Start/End: Complemental strand, 47141607 - 47141378
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47141607 agcctctgtttggtttggcatttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 47141508  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||    
T  47141507 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcttagaatcaattctacaccctcaattctattaattccatc 47141408  T
Q  341 cctgccctcattaatttttctaacccttct 370  Q
    ||||||||||||||||||||||||||||||    
T  47141407 cctgccctcattaatttttctaacccttct 47141378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 139 - 370
Target Start/End: Original strand, 1527529 - 1527760
Alignment:
Q  139 ttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  1527529 ttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaa 1527628  T
Q  239 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttca 338  Q
    | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  1527629 actagcttttatcctccgaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 1527728  T
Q  339 tccctgccctcattaatttttctaacccttct 370  Q
    | ||||||||||||||||||||||||||||||    
T  1527729 ttcctgccctcattaatttttctaacccttct 1527760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 139 - 362
Target Start/End: Original strand, 47696997 - 47697220
Alignment:
Q  139 ttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 238  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  47696997 ttagcctctgtttggtttggcttttgcaaagccagaatcaattctgaagcatttcaaaagcaattctgcaatatttaacatgtttggtttgccttttcaa 47697096  T
Q  239 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttca 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  47697097 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 47697196  T
Q  339 tccctgccctcattaatttttcta 362  Q
    ||||||||||||||||||||||||    
T  47697197 tccctgccctcattaatttttcta 47697220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 139 - 370
Target Start/End: Original strand, 52691925 - 52692156
Alignment:
Q  139 ttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||    
T  52691925 ttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttaaa 52692024  T
Q  239 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttca 338  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  52692025 aatagattttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattcca 52692124  T
Q  339 tccctgccctcattaatttttctaacccttct 370  Q
    ||||||||||||||||||||||||||||||||    
T  52692125 tccctgccctcattaatttttctaacccttct 52692156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 370 - 482
Target Start/End: Complemental strand, 51125344 - 51125232
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51125344 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 51125245  T
Q  470 tcatcatgatgat 482  Q
    |||||||||||||    
T  51125244 tcatcatgatgat 51125232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 52692664 - 52692776
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52692664 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 52692763  T
Q  470 tcatcatgatgat 482  Q
    |||||||||||||    
T  52692764 tcatcatgatgat 52692776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 33025896 - 33025798
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||| ||||||||||| |||| ||||||||||||||||||||  || ||||||||||||||||||| |  |||||||| |||||||||||||    
T  33025896 tgtttggtttgacttttcaaaattgcttctatcctccaaaagcaattctccttaaagctacaattcctagcttttggctttcctataatcaattctaca 33025798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 42074392 - 42074490
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||||| ||| |||| |||||||||||| |||||||  || ||||||||||||||||||| | ||||| || ||||||||||||||    
T  42074392 tgtttggtttggcttttcagaattgcttctatcctccaaaaacaattctccttaaagctacaattcctagcttttgactttgctcgaatcaattctaca 42074490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 219 - 318
Target Start/End: Complemental strand, 53687475 - 53687376
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacac 318  Q
    ||||||||||| ||||||| ||| |||| |||||||||||||||||||| ||| |||||||||||||||| || |  |||| ||| ||||||||||||||    
T  53687475 tgtttggtttgacttttcataattgcttctatcctccaaaagcaattcttgttaaagctacaattcctaggttttggcttttctaaaatcaattctacac 53687376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 51229727 - 51229825
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||||||| |||||||||||| |||| ||||||||||||  ||||||  || ||||||||||||||| ||| |  ||||||||||||||||||||||    
T  51229727 tgtttggtttagcttttcaaaattgcttctatcctccaaaaataattctccttaaagctacaattcctaacttttggctttcctagaatcaattctaca 51229825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 219 - 288
Target Start/End: Original strand, 51407464 - 51407533
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctag 288  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||||| | ||||||||||||||| ||||    
T  51407464 tgtttggtttggcttttcagaattgcttctatcctccaaaagcaattttggttgaagctacaatttctag 51407533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 48181071 - 48181167
Alignment:
Q  221 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||| | ||| | ||| |||| ||||||||||||||||||||  || || |||||||||||||||| |  ||||||||||||||||||||||    
T  48181071 tttggtttgacattttagaattgcttctatcctccaaaagcaattctccttaaaactacaattcctagcttttggctttcctagaatcaattctaca 48181167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 11263709 - 11263787
Alignment:
Q  237 aaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 315  Q
    ||||| |||| |||||||||||||||||| |  |||||||||||| ||||||||| |  ||||||||||||||||||||    
T  11263709 aaaattgcttctatcctccaaaagcaattatccttgaagctacaaatcctagcttttggctttcctagaatcaattcta 11263787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 42274518 - 42274616
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||| |||||||||| | ||| | || ||||||||||||||||||||  || ||| ||||||||||||||| |  ||||| ||||||||||||||||    
T  42274518 tgtttgatttggctttttagaattgattctatcctccaaaagcaattctccttaaagttacaattcctagcttttggctttcatagaatcaattctaca 42274616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 45150598 - 45150696
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |  |||||||||||| ||||||||| |   |||||||||||||||||||||    
T  45150598 tgtttggtttggcttttaagaattgtttctatcctccaaaaacaattatccttgaagctacaaatcctagcttttggttttcctagaatcaattctaca 45150696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 48254602 - 48254506
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 315  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||    
T  48254602 tgtttggtttgacttttaagaattgattatatcctccaaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattcta 48254506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 28182370 - 28182468
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||| | ||| |||| |||||||||| ||||||| |  || |||||| |||||||| ||| |  |||||||| |||||||||||||    
T  28182370 tgtttggtttggctttttagaattgcttctatcctccaacagcaattatccttaaagctaaaattcctaacttttggctttcctataatcaattctaca 28182468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 30809842 - 30809904
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  30809842 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 30809904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 31813401 - 31813499
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||| ||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  31813401 tgtttagtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 31813499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 44610889 - 44610827
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    |||||||||||||||| ||||||||||||||| ||||||| | | |||  |||||||||||||    
T  44610889 ctccaaaagcaattctggttgaagctacaatttctagcttttgagtttattagaatcaattct 44610827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 44328692 - 44328754
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    |||||||||||||| | | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  44328692 ctccaaaagcaattttggctgaagctacaattcctagcttttgagttaactagaatcaattct 44328754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 231; Significance: 1e-127; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 136 - 370
Target Start/End: Original strand, 40254339 - 40254573
Alignment:
Q  136 aacttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttt 235  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254339 aacttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttt 40254438  T
Q  236 caaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatt 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40254439 caaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatt 40254538  T
Q  336 tcatccctgccctcattaatttttctaacccttct 370  Q
     ||||||||||||||||||||||||||||||||||    
T  40254539 ccatccctgccctcattaatttttctaacccttct 40254573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 141 - 370
Target Start/End: Original strand, 14379660 - 14379889
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14379660 agcctccgtttggtttggcttttgcaaagtcagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 14379759  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14379760 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 14379859  T
Q  341 cctgccctcattaatttttctaacccttct 370  Q
    ||||||||||||||||||||||||||||||    
T  14379860 cctgccctcattaatttttctaacccttct 14379889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 140 - 356
Target Start/End: Original strand, 31786698 - 31786914
Alignment:
Q  140 tagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31786698 tagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 31786797  T
Q  240 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcat 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31786798 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 31786897  T
Q  340 ccctgccctcattaatt 356  Q
    |||||||||||||||||    
T  31786898 ccctgccctcattaatt 31786914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 141 - 357
Target Start/End: Original strand, 44282494 - 44282710
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44282494 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 44282593  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  44282594 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 44282693  T
Q  341 cctgccctcattaattt 357  Q
    |||||||||||||||||    
T  44282694 cctgccctcattaattt 44282710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 150 - 364
Target Start/End: Complemental strand, 31686984 - 31686770
Alignment:
Q  150 ttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagctttta 249  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31686984 ttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagctttta 31686885  T
Q  250 tcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctc 349  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  31686884 tcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctc 31686785  T
Q  350 attaatttttctaac 364  Q
    |||||||||||||||    
T  31686784 attaatttttctaac 31686770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 14380229 - 14380341
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14380229 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 14380328  T
Q  470 tcatcatgatgat 482  Q
    |||||||||||||    
T  14380329 tcatcatgatgat 14380341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 14036738 - 14036850
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||| ||||    
T  14036738 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaattgatattgattttaatgtttatgaagatgaaagcacaatcat 14036837  T
Q  470 tcatcatgatgat 482  Q
    ||| |||||||||    
T  14036838 tcaccatgatgat 14036850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 13896121 - 13896233
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||  ||||    
T  13896121 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaattgatattgattttaatgtttatgaagatgaaagcacgatcat 13896220  T
Q  470 tcatcatgatgat 482  Q
    ||| |||||||||    
T  13896221 tcaccatgatgat 13896233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 145 - 349
Target Start/End: Complemental strand, 2443868 - 2443663
Alignment:
Q  145 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 243  Q
    |||||||||||||||||||| | |||  ||| |||||||  | |||| ||||||||||||| ||| |||| || |||||||||||||||||||| ||| |    
T  2443868 tctgtttggtttggcttttgtacagctggaaacaattctacaacattccaaaagcaattctacaacatttcaatatgtttggtttggcttttcagaattg 2443769  T
Q  244 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccct 343  Q
    ||| |||||||||||| |||||||   | ||||||||||||||||||| |  |||| ||||||||||||||||||||||||||| || |||| |||| ||    
T  2443768 cttctatcctccaaaaacaattctccataaagctacaattcctagcttatgccttttctagaatcaattctacaccctcaattccatcaattccatcact 2443669  T
Q  344 gccctc 349  Q
    ||||||    
T  2443668 gccctc 2443663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 370 - 483
Target Start/End: Complemental strand, 5916906 - 5916793
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||||||  || ||||  ||| | ||||||||| |||||||||||||||  ||||||||    
T  5916906 ttcatatagttgtcgcaacaatggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcat 5916807  T
Q  470 tcatcatgatgatg 483  Q
    ||| ||||||||||    
T  5916806 tcaccatgatgatg 5916793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 370 - 483
Target Start/End: Original strand, 36311719 - 36311832
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||||||  || ||||  ||| | ||||||||| |||||||||||||||  ||||||||    
T  36311719 ttcatatagttgtcgcaacaatggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcat 36311818  T
Q  470 tcatcatgatgatg 483  Q
    ||| ||||||||||    
T  36311819 tcaccatgatgatg 36311832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 37640859 - 37640761
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||  | ||| |||| |||||||||||||||||| |  |||||||||||| || |||||| |  ||||||||||||||||||||||    
T  37640859 tgtttggtttggctttcaagaattgcttctatcctccaaaagcaattatccttgaagctacaaatcttagcttttggctttcctagaatcaattctaca 37640761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 37996718 - 37996816
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||||| ||| |||| ||||||||||||| |||||   || ||||||||||||||| ||| |  ||||||| ||||||||||||||    
T  37996718 tgtttggtttggcttttcataattgcttctatcctccaaaagtaattcaccttaaagctacaattcctaacttttggctttccttgaatcaattctaca 37996816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 222 - 317
Target Start/End: Complemental strand, 3739143 - 3739048
Alignment:
Q  222 ttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||||||||||||| ||| |||| |||| ||||||||||||| |  || |||||||||||||||  || | |||||| ||||||||||||||||    
T  3739143 ttggtttggcttttcataattgcttctatcatccaaaagcaattttccttaaagctacaattcctaatttttgactttcttagaatcaattctaca 3739048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 7473518 - 7473616
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||||||||| |||| | ||| |||| |||||||||||| ||||| |  |||||||||||| ||||| ||| |  |||||| |||||||||||||||    
T  7473518 tgtttggtttggtttttaagaattgcttctatcctccaaaaacaattatccttgaagctacaaatcctaacttttggctttccaagaatcaattctaca 7473616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 17480814 - 17480912
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||| ||||||||||| | ||| | || |||||| ||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  17480814 tgtttagtttggcttttaagaattgattctatccttcaaaagcaattatctttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 17480912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 314
Target Start/End: Original strand, 37551592 - 37551653
Alignment:
Q  253 tccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    ||||||||||||||| |||||||||||||||||||| |||| | ||  ||||||||||||||    
T  37551592 tccaaaagcaattctggttgaagctacaattcctagtttctgagttaactagaatcaattct 37551653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 14033372 - 14033470
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  14033372 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 14033470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 43342375 - 43342277
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||| ||||| |||| | ||| | || |||||||||||||||||| |  || ||||||||| | |||||||||  |||| |||||||||||||||||    
T  43342375 tgtttgatttggtttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaattctagcttctagcttttctagaatcaattctaca 43342277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 13892752 - 13892850
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  13892752 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 13892850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 14032877 - 14032975
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  14032877 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 14032975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 35458283 - 35458185
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||| ||||| | ||| | || |||| ||||||||||||| |  || || |||||| ||||| |||||  |||| |||||||||||||||||    
T  35458283 tgtttggtttgacttttaagaattgattctatcatccaaaagcaattatccttaaaactacaaatcctaacttctagcttttctagaatcaattctaca 35458185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 314
Target Start/End: Original strand, 44002684 - 44002742
Alignment:
Q  256 aaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    |||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  44002684 aaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 44002742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 228; Significance: 1e-125; HSPs: 29)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 139 - 370
Target Start/End: Complemental strand, 31431243 - 31431012
Alignment:
Q  139 ttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31431243 ttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 31431144  T
Q  239 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttca 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  31431143 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 31431044  T
Q  339 tccctgccctcattaatttttctaacccttct 370  Q
    ||||||||||||||||||||||||||||||||    
T  31431043 tccctgccctcattaatttttctaacccttct 31431012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 141 - 370
Target Start/End: Complemental strand, 24038267 - 24038038
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24038267 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 24038168  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24038167 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 24038068  T
Q  341 cctgccctcattaatttttctaacccttct 370  Q
    |||| |||||||||||||||||||||||||    
T  24038067 cctgtcctcattaatttttctaacccttct 24038038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 141 - 370
Target Start/End: Original strand, 24246540 - 24246769
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  24246540 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattatgcaatatttaacatgtttggtttggcttttcaaaa 24246639  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24246640 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 24246739  T
Q  341 cctgccctcattaatttttctaacccttct 370  Q
    ||||||||||||||||||||||||||||||    
T  24246740 cctgccctcattaatttttctaacccttct 24246769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 141 - 370
Target Start/End: Complemental strand, 39383163 - 39382934
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39383163 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 39383064  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  39383063 tagcttttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatc 39382964  T
Q  341 cctgccctcattaatttttctaacccttct 370  Q
    ||||||||||||||||||||||||||||||    
T  39382963 cctgccctcattaatttttctaacccttct 39382934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 142 - 370
Target Start/End: Original strand, 18140375 - 18140603
Alignment:
Q  142 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18140375 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaat 18140474  T
Q  242 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatcc 341  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  18140475 agcttttatcctccaaaagcaattttagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 18140574  T
Q  342 ctgccctcattaatttttctaacccttct 370  Q
    |||||||||||||||||||||||||||||    
T  18140575 ctgccctcattaatttttctaacccttct 18140603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 142 - 370
Target Start/End: Original strand, 49127588 - 49127816
Alignment:
Q  142 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49127588 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaat 49127687  T
Q  242 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatcc 341  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  49127688 agcttttatcctccaaaagcaattttagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 49127787  T
Q  342 ctgccctcattaatttttctaacccttct 370  Q
    |||||||||||||||||||||||||||||    
T  49127788 ctgccctcattaatttttctaacccttct 49127816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 370 - 482
Target Start/End: Complemental strand, 24036175 - 24036063
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24036175 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaatgcagaaaatgatatggattttaatgtttatgaagatgaaagcacaatcat 24036076  T
Q  470 tcatcatgatgat 482  Q
    |||||||||||||    
T  24036075 tcatcatgatgat 24036063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 56560630 - 56560742
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||  ||||    
T  56560630 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaattgatattgattttaatgtttatgaagatgaaagcacgatcat 56560729  T
Q  470 tcatcatgatgat 482  Q
    ||| |||||||||    
T  56560730 tcaccatgatgat 56560742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 4114301 - 4114213
Alignment:
Q  53 ttccaaattgccgatgcatatgacacgcagtgattggtgaatcaaatgcatgccaacaacactagagatctatttgaataaacaactta 141  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  4114301 ttccaaattgccaaggcatatgacacgcagtgattggtgaatcaaatgcatgccaacaacactagagatctgtttggataaacaactta 4114213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 370 - 482
Target Start/End: Complemental strand, 52056954 - 52056842
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||| || ||| |||| | |||| ||||||||||||||||||||||||  ||||    
T  52056954 ttcaaatagttgtcgcaacaatggctatacacaaatttatctgaaggaagacaaaaattgattttgattctaatgtttatgaagatgaaagcacgttcat 52056855  T
Q  470 tcatcatgatgat 482  Q
    ||| |||||||||    
T  52056854 tcaccatgatgat 52056842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 154 - 340
Target Start/End: Complemental strand, 51834412 - 51834225
Alignment:
Q  154 tttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatt-taacatgtttggtttggcttttcaaaatagcttttatcc 252  Q
    |||| |||||| | ||| |||| |||||||  | |||| ||||||||||||| ||| ||| ||| |||||||||||| ||||||| ||| |||| |||||    
T  51834412 tttgacttttgtacagctagaagcaattctataacattccaaaagcaattctacaacattctaatatgtttggtttgacttttcagaattgcttctatcc 51834313  T
Q  253 tccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    |||||||||||||||   | ||||||||||||||| |||||  |||| |||||||||||| ||||| |||||||| || |||| ||||    
T  51834312 tccaaaagcaattctccataaagctacaattcctaacttctggcttttctagaatcaattatacactctcaattccatcaattccatc 51834225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 373 - 463
Target Start/End: Original strand, 51806037 - 51806127
Alignment:
Q  373 aaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcac 463  Q
    ||||||| | ||||||||||||||| ||||||||||| |||||||| ||| ||| |||||| ||||||||||||||||||||| |||||||    
T  51806037 aaatagtagccgcaacaatggctatgcacaactttattcgaaggaaagcaaaaattgatattgattttaatgtttatgaagataaaagcac 51806127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 370 - 483
Target Start/End: Original strand, 16565661 - 16565774
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||||||  || ||||  ||| | ||||||||| |||||||||||||||  ||||||||    
T  16565661 ttcatatagttgtcgcaacaatggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcat 16565760  T
Q  470 tcatcatgatgatg 483  Q
    ||| ||||||||||    
T  16565761 tcaccatgatgatg 16565774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 53404209 - 53404111
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||| |  ||||||| ||||||||||||||||||||  || ||||||||||||||||||| |   |||||||||||||||| ||||    
T  53404209 tgtttggtttggcttttaagcatagcttctatcctccaaaagcaattctccttaaagctacaattcctagcttttggttttcctagaatcaattttaca 53404111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 45105807 - 45105904
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||||| ||| |||| ||||||||| ||||||||||  || |||||| ||||| |||||| || |||| |||||||||||||||||    
T  45105807 tgtttggtttggcttttcagaattgcttatatcctccagaagcaattcttcttaaagctaaaattcatagctt-ttgcttttctagaatcaattctaca 45105904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 52058350 - 52058252
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  |||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  52058350 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 52058252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 224 - 317
Target Start/End: Complemental strand, 30418490 - 30418397
Alignment:
Q  224 ggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||||||||| ||||| | || |||||||||||||||||| |  || ||||||||| ||||| ||| |  ||||||||||||||||||||||    
T  30418490 ggtttggcttttaaaaattgattctatcctccaaaagcaattatccttcaagctacaaatcctaacttttagctttcctagaatcaattctaca 30418397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 22606458 - 22606362
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 315  Q
    ||||||||||  ||||| | ||| |||| |||||||||||||||||| |   ||||||||||| ||||||||| | ||||||| |||||||||||||    
T  22606458 tgtttggtttaacttttaagaattgcttctatcctccaaaagcaattattcgtgaagctacaaatcctagcttttgactttccaagaatcaattcta 22606362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 28911579 - 28911649
Alignment:
Q  217 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 287  Q
    ||||||||||||||||| ||| ||| |||| || ||||||||||||||| | | |||||||||||||||||    
T  28911579 catgtttggtttggcttatcagaattgcttctaccctccaaaagcaattgtggatgaagctacaattccta 28911649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 38767791 - 38767889
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |  ||||||||||||  ||||| || |  |||||| |||||||||||||||    
T  38767791 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccttgaagctacaaagcctagtttttggctttccaagaatcaattctaca 38767889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 220 - 317
Target Start/End: Complemental strand, 53663732 - 53663635
Alignment:
Q  220 gtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||| |||||||||| | ||| | || |||||||||||||||||| |  || ||||||||||||||| ||| |  |||||||| |||||||||||||    
T  53663732 gtttgatttggctttttagaattgattctatcctccaaaagcaattatccttaaagctacaattcctaacttttggctttcctataatcaattctaca 53663635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 315
Target Start/End: Complemental strand, 28963966 - 28963870
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 315  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||    
T  28963966 tgtttggtttgacttttaagaattgattatatcctccaaaagcaattattcttaaagctacaaatcctaacttctagcttttctagaatcaattcta 28963870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 16203159 - 16203097
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    |||||||||||||| | ||||||||||||||||||||||| | | ||  ||||||||||||||    
T  16203159 ctccaaaagcaattttggttgaagctacaattcctagcttttgagttgactagaatcaattct 16203097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 39732843 - 39732905
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  39732843 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 39732905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 50523936 - 50523874
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    |||||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  50523936 ctccaaaagcaattctggatgaagctacaattcctagcttttgagttagctagaatcaattct 50523874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 21 - 54
Target Start/End: Complemental strand, 4114396 - 4114363
Alignment:
Q  21 aagggcatggtaacacaagtatggaaggaaaatt 54  Q
    ||||||||||||||||||||||||||||||||||    
T  4114396 aagggcatggtaacacaagtatggaaggaaaatt 4114363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 291
Target Start/End: Original strand, 49723784 - 49723855
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 291  Q
    ||||||||||||||||| | ||| | || ||||||||||||| |||||| ||| |||||||||||| ||||||    
T  49723784 tgtttggtttggcttttaagaattgtttctatcctccaaaag-aattctcgttaaagctacaattcttagctt 49723855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 5937908 - 5937846
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    |||||||||||||| | | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  5937908 ctccaaaagcaattatggatgaagctacaattcctagcttttgagttagctagaatcaattct 5937846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Original strand, 26457118 - 26457183
Alignment:
Q  226 tttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 291  Q
    |||| ||||||| ||| ||||||||||||||||| |||||    |||||||||||||| |||||||    
T  26457118 tttgacttttcagaattgcttttatcctccaaaaacaatttcgattgaagctacaatttctagctt 26457183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 140 - 370
Target Start/End: Complemental strand, 30984508 - 30984278
Alignment:
Q  140 tagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30984508 tagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 30984409  T
Q  240 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcat 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  30984408 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 30984309  T
Q  340 ccctgccctcattaatttttctaacccttct 370  Q
    |||||||||||||||||||||||||||||||    
T  30984308 ccctgccctcattaatttttctaacccttct 30984278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 141 - 370
Target Start/End: Original strand, 30210394 - 30210623
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210394 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 30210493  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30210494 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 30210593  T
Q  341 cctgccctcattaatttttctaacccttct 370  Q
    |||| |||||||||||||||||||||||||    
T  30210594 cctgtcctcattaatttttctaacccttct 30210623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 140 - 370
Target Start/End: Complemental strand, 34774554 - 34774324
Alignment:
Q  140 tagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 239  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34774554 tagcctctgtttggtttggcttttgcaaagccagaatcaattttggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaa 34774455  T
Q  240 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcat 339  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  34774454 atagtttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 34774355  T
Q  340 ccctgccctcattaatttttctaacccttct 370  Q
    |||||||||||||||||||||||||||||||    
T  34774354 ccctgccctcattaatttttctaacccttct 34774324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 193509 - 193621
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  193509 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 193608  T
Q  470 tcatcatgatgat 482  Q
    |||||||||||||    
T  193609 tcatcatgatgat 193621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 721113 - 721225
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  721113 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 721212  T
Q  470 tcatcatgatgat 482  Q
    |||||||||||||    
T  721213 tcatcatgatgat 721225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 882220 - 882332
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  882220 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 882319  T
Q  470 tcatcatgatgat 482  Q
    |||||||||||||    
T  882320 tcatcatgatgat 882332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 30210706 - 30210818
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30210706 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 30210805  T
Q  470 tcatcatgatgat 482  Q
    |||||||||||||    
T  30210806 tcatcatgatgat 30210818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 370 - 482
Target Start/End: Complemental strand, 30983184 - 30983072
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30983184 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 30983085  T
Q  470 tcatcatgatgat 482  Q
    |||||||||||||    
T  30983084 tcatcatgatgat 30983072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 185 - 295
Target Start/End: Complemental strand, 629586 - 629476
Alignment:
Q  185 gagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattc 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  629586 gagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattc 629487  T
Q  285 ctagcttctta 295  Q
    |||||||||||    
T  629486 ctagcttctta 629476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 44240244 - 44240356
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||||||||||||||||||||||||||||| |||||||||| ||||||||||| ||| |||||| |||||||||||||||||||||||||||||| ||||    
T  44240244 ttcaaatagttgtcgcaacaatggctatacgcaactttatctgaaggaaggcataaattgatattgattttaatgtttatgaagatgaaagcacaatcat 44240343  T
Q  470 tcatcatgatgat 482  Q
    ||| |||||||||    
T  44240344 tcaccatgatgat 44240356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 189774 - 189862
Alignment:
Q  282 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaatttttctaacccttct 370  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  189774 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttct 189862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 717378 - 717466
Alignment:
Q  282 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaatttttctaacccttct 370  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  717378 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttct 717466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 878485 - 878573
Alignment:
Q  282 ttcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatccctgccctcattaatttttctaacccttct 370  Q
    |||||||  ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  878485 ttcctagaatcttactttcctagaatcaattctacaccctcaattctattaattccatccctgccctcattaatttttctaacccttct 878573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 35164474 - 35164381
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||||||||||||||||     |||| ||||||||||||||||||||  ||||||||||||||||||| || | |||||||| ||||||||||||||    
T  35164474 tgtttggtttggcttttca-----gcttctatcctccaaaagcaattctccttgaagctacaattcctagtttttgactttcctcgaatcaattctaca 35164381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 35802442 - 35802344
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||| ||||| ||||| |||| |||||||||||||||||| |  |||||||||||  ||||||||| |  ||||||||||||||||||||||    
T  35802442 tgtttggtttgacttttaaaaattgcttctatcctccaaaagcaattatccttgaagctacatatcctagcttttggctttcctagaatcaattctaca 35802344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 217 - 287
Target Start/End: Original strand, 924099 - 924169
Alignment:
Q  217 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 287  Q
    ||||||||||||| ||||||||||| |||| ||| ||||||||| |||||||||| |||||||||||||||    
T  924099 catgtttggtttgacttttcaaaattgcttctatactccaaaagtaattctagttaaagctacaattccta 924169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 140 - 184
Target Start/End: Original strand, 308871 - 308915
Alignment:
Q  140 tagcctctgtttggtttggcttttgcaaagccagaatcaattctg 184  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  308871 tagcctctgtttggtttggcttttgcaaagccagaatcaattctg 308915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 45276501 - 45276403
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||| ||||| ||||| ||||| | || |||||||||||||||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  45276501 tgttttgtttgacttttaaaaattgattatatcctccaaaagcaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 45276403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 8416662 - 8416760
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||| |||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||||    
T  8416662 tgtttgatttggcttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaatcctaacttctagcttttctagaatcaattctaca 8416760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 36821725 - 36821653
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 291  Q
    ||||||||||||||||||| ||| |||| |||||||||||||||||| |  || ||| ||||||||| |||||    
T  36821725 tgtttggtttggcttttcagaattgcttctatcctccaaaagcaattatccttaaagttacaattccaagctt 36821653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 3590107 - 3590169
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    |||||||| ||||||| ||||||||||||||||||| ||| | | ||  ||||||||||||||    
T  3590107 ctccaaaaacaattctggttgaagctacaattcctaacttttgagttaactagaatcaattct 3590169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 227; Significance: 1e-125; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 140 - 370
Target Start/End: Complemental strand, 31012609 - 31012379
Alignment:
Q  140 tagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31012609 tagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 31012510  T
Q  240 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcat 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  31012509 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 31012410  T
Q  340 ccctgccctcattaatttttctaacccttct 370  Q
    |||||||||||||||||||||||||||||||    
T  31012409 ccctgccctcattaatttttctaacccttct 31012379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 139 - 370
Target Start/End: Complemental strand, 25341652 - 25341421
Alignment:
Q  139 ttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25341652 ttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 25341553  T
Q  239 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttca 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  25341552 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 25341453  T
Q  339 tccctgccctcattaatttttctaacccttct 370  Q
    | ||||||||||||||||||||||||||||||    
T  25341452 ttcctgccctcattaatttttctaacccttct 25341421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 196 - 327
Target Start/End: Original strand, 41064585 - 41064717
Alignment:
Q  196 aagcaattctgcaatatt-taacatgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttctt 294  Q
    |||||||||| ||| ||| ||| |||||||||||| ||||||| ||| |||| |||||||||||| |||||||   | |||||||||||||||||||||     
T  41064585 aagcaattctacaacattctaatatgtttggtttgccttttcataattgcttctatcctccaaaaacaattctccataaagctacaattcctagcttctg 41064684  T
Q  295 actttcctagaatcaattctacaccctcaattc 327  Q
    ||||| |||||||||||||||||||||||||||    
T  41064685 acttttctagaatcaattctacaccctcaattc 41064717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 25970433 - 25970531
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||| | ||| |||| ||||||||||||| ||||||  || ||||||||||||||||||| |  ||||| ||||||||||||||||    
T  25970433 tgtttggtttggcttttaagaattgcttctatcctccaaaagtaattctctttaaagctacaattcctagcttttggctttcttagaatcaattctaca 25970531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 217 - 314
Target Start/End: Original strand, 39857075 - 39857172
Alignment:
Q  217 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    ||||||||||||| ||||||| ||| |||| ||||||||||||| |||||| | |||||||||||||| |||||| | | ||  ||||||||||||||    
T  39857075 catgtttggtttgacttttcagaattgcttctatcctccaaaagtaattctggatgaagctacaattcatagcttttgagttaactagaatcaattct 39857172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 37638825 - 37638937
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||| ||| |||||||||||||||| ||||||||||||||  ||||||  || ||||  ||| | ||||||||| |||||||||||||||  ||||||||    
T  37638825 ttcatatatttgtcgcaacaatggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcat 37638924  T
Q  470 tcatcatgatgat 482  Q
    |||  ||||||||    
T  37638925 tcacaatgatgat 37638937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 218 - 317
Target Start/End: Original strand, 37371078 - 37371177
Alignment:
Q  218 atgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||||||||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||| |||||  |||| |||||||||||||||||    
T  37371078 atgtttggtttggcttttaagaattggttctatcctccaaaagcaattatctttaaagctacaaatcctaacttctagcttttctagaatcaattctaca 37371177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 14999868 - 14999966
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||| | ||| | || ||||||||||||| ||||||  || |||||||||||||||  || |  ||||||||||||||||||||||    
T  14999868 tgtttggtttggctttttagaattgattctatcctccaaaagtaattctccttaaagctacaattcctaatttttggctttcctagaatcaattctaca 14999966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 30825190 - 30825288
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||| ||||| | ||| |||| |||||||||||| |||||||  || ||| ||||||||||||||| |  |||||| |||||||||||||||    
T  30825190 tgtttggtttgcctttttagaattgcttctatcctccaaaaacaattctccttaaagttacaattcctagcttttggctttccaagaatcaattctaca 30825288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 221 - 317
Target Start/End: Original strand, 26826384 - 26826480
Alignment:
Q  221 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||| | |||  ||| ||||||||||||| ||||||  || ||| ||||||||||| ||| || |||||||| |||||||||||||    
T  26826384 tttggtttggcttttaagaattacttctatcctccaaaagtaattctccttaaaggtacaattcctaactttttcctttcctataatcaattctaca 26826480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 25472863 - 25472765
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |  |||||||||||| || ||||||||   ||| |||||||||||||||||    
T  25472863 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccttgaagctacaaatcatagcttctacattttctagaatcaattctaca 25472765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 482
Target Start/End: Complemental strand, 10372677 - 10372565
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||| ||| |||||||||||||||| ||||||||||||||  ||||||  || ||||  ||| | ||||| ||| |||||||| ||||||  ||| ||||    
T  10372677 ttcatataattgtcgcaacaatggcaatacacaactttattagaaggagtgctgaaatggatgttgatttcaatctttatgaaaatgaaaatacaatcat 10372578  T
Q  470 tcatcatgatgat 482  Q
    ||| |||||||||    
T  10372577 tcaccatgatgat 10372565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 12909229 - 12909327
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  12909229 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 12909327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 43664912 - 43664814
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||| ||| |||||||| |||   || |||||||||||||||||| |  || ||||||||||| ||| | | | |||||||||||||||||||||||    
T  43664912 tgtttgttttagcttttcagaattcattctatcctccaaaagcaatttttcttaaagctacaatttctaacctttgactttcctagaatcaattctaca 43664814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 19544572 - 19544634
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    ||||||||| |||| | |||||||||||||||| |||||| | | ||| ||||||||||||||    
T  19544572 ctccaaaagtaattatggttgaagctacaattcatagcttttgagtttactagaatcaattct 19544634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 24)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 136 - 370
Target Start/End: Complemental strand, 3261049 - 3260815
Alignment:
Q  136 aacttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttt 235  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  3261049 aacttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgactttt 3260950  T
Q  236 caaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatt 335  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3260949 caaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatt 3260850  T
Q  336 tcatccctgccctcattaatttttctaacccttct 370  Q
     ||||||||||||||||||||||||||||||||||    
T  3260849 ccatccctgccctcattaatttttctaacccttct 3260815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 142 - 370
Target Start/End: Complemental strand, 29542646 - 29542418
Alignment:
Q  142 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29542646 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 29542547  T
Q  242 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatcc 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  29542546 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 29542447  T
Q  342 ctgccctcattaatttttctaacccttct 370  Q
    |||||||||||||||||||||||||||||    
T  29542446 ctgccctcattaatttttctaacccttct 29542418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 141 - 370
Target Start/End: Original strand, 42663356 - 42663585
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  42663356 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaaa 42663455  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42663456 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 42663555  T
Q  341 cctgccctcattaatttttctaacccttct 370  Q
    ||||||||||||||||||||||||||||||    
T  42663556 cctgccctcattaatttttctaacccttct 42663585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 141 - 357
Target Start/End: Original strand, 33114956 - 33115172
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33114956 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggctttttaaaa 33115055  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  33115056 tagtttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 33115155  T
Q  341 cctgccctcattaattt 357  Q
    |||||||||||||||||    
T  33115156 cctgccctcattaattt 33115172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 142 - 357
Target Start/End: Original strand, 14082814 - 14083029
Alignment:
Q  142 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 241  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| |||||    
T  14082814 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctacaatatttaacatgtttggtttgactttttaaaat 14082913  T
Q  242 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatcc 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  14082914 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 14083013  T
Q  342 ctgccctcattaattt 357  Q
    ||||||||||||||||    
T  14083014 ctgccctcattaattt 14083029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 370 - 482
Target Start/End: Complemental strand, 27738524 - 27738412
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||  ||||    
T  27738524 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaattgatattgattttaatgtttatgaagatgaaagcacgatcat 27738425  T
Q  470 tcatcatgatgat 482  Q
    ||| |||||||||    
T  27738424 tcaccatgatgat 27738412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 33232579 - 33232691
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||  ||||    
T  33232579 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaagccagaaattgatattgattttaatgtttatgaagatgaaagcacgatcat 33232678  T
Q  470 tcatcatgatgat 482  Q
    ||| |||||||||    
T  33232679 tcaccatgatgat 33232691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 370 - 482
Target Start/End: Complemental strand, 7071993 - 7071881
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||   |||    
T  7071993 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaattgatattaattttaatgtttatgaagatgaaagcacgaccat 7071894  T
Q  470 tcatcatgatgat 482  Q
    ||| |||||||||    
T  7071893 tcaccatgatgat 7071881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 370 - 483
Target Start/End: Original strand, 22481637 - 22481750
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||||||  || ||||  ||| | ||||||||| |||||||||||||||  ||||||||    
T  22481637 ttcatatagttgtcgcaacaatggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcat 22481736  T
Q  470 tcatcatgatgatg 483  Q
    ||| ||||||||||    
T  22481737 tcaccatgatgatg 22481750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 314
Target Start/End: Original strand, 2526282 - 2526379
Alignment:
Q  217 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    ||||||||||||||||||||| ||| |||| || || |||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  2526282 catgtttggtttggcttttcagaattgcttctaccccccaaaagcaattctggatgaagctacaattcctagcttttgagttaactagaatcaattct 2526379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 219 - 291
Target Start/End: Complemental strand, 53765 - 53693
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagctt 291  Q
    ||||||||||| ||||||| ||| |||| |||||||||||||||||| | |||||||||||||||||||||||    
T  53765 tgtttggtttgccttttcataattgcttctatcctccaaaagcaattatggttgaagctacaattcctagctt 53693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 27739449 - 27739351
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||| ||||| | ||| |||| |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  27739449 tgtttggtttgacttttaagaattgcttctatcctccaaaagcaattatccgtgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 27739351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 221 - 318
Target Start/End: Complemental strand, 8958599 - 8958502
Alignment:
Q  221 tttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacac 318  Q
    ||||||||| ||||||| ||| | || ||||||| |||| |||||||  || |||||||||||||||  || |  |||||||||||||||||||||||    
T  8958599 tttggtttgacttttcagaattgtttctatcctctaaaaacaattctccttaaagctacaattcctaatttttggctttcctagaatcaattctacac 8958502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 37066657 - 37066560
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctac 316  Q
    ||||||||||||||||| | ||| | || ||||||| |||||||||| |  || ||||||||| ||||| |||||  |||| ||||||||||||||||    
T  37066657 tgtttggtttggcttttaagaattggttatatcctctaaaagcaattatcattaaagctacaaatcctaacttctagcttttctagaatcaattctac 37066560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 316
Target Start/End: Complemental strand, 41040234 - 41040137
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctac 316  Q
    ||||||||||||||||| | ||| |||| ||||||||||||  |||| |  |||||||||||| ||||||||| |  |||| | ||||||||||||||    
T  41040234 tgtttggtttggcttttaagaattgcttctatcctccaaaaataattatccttgaagctacaaatcctagcttttggcttttcaagaatcaattctac 41040137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 370 - 405
Target Start/End: Original strand, 21022303 - 21022338
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaact 405  Q
    ||||||||||||||||||||||||||||||||||||    
T  21022303 ttcaaatagttgtcgcaacaatggctatacacaact 21022338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 7073373 - 7073275
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||| ||||| |||| |||   ||||||| |||| |  |||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  7073373 tgtttggtttggcttttaaaaattgcttctatttcccaaaagtaattatccttgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 7073275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 21022730 - 21022632
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||| | ||| | || |||||||| ||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  21022730 tgtttggtttggcttttaagaattgattctatcctcctaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 21022632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 33229204 - 33229302
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||| ||| |  ||||  ||||||||||||||||    
T  33229204 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctaacttttggcttttgtagaatcaattctaca 33229302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 39236994 - 39236896
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |   ||||||||||| ||||| ||| | |||||  ||||||||||||||||    
T  39236994 tgtttggtttggcttttaagaattgattctatcctccaaaaacaattatccatgaagctacaaatcctaacttttgacttttgtagaatcaattctaca 39236896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 40979452 - 40979491
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagctt 291  Q
    |||||||||||||||| | |||||||||||||||||||||    
T  40979452 ctccaaaagcaattctggatgaagctacaattcctagctt 40979491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 10900165 - 10900227
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    |||||||||||||||| | ||||||||||||||||| ||| | | ||  ||||||||||||||    
T  10900165 ctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattct 10900227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 19356501 - 19356599
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||| | | | | || ||||||| |||||||||| |  || || |||||| |||| |||||| | ||| |||||||||||||||||    
T  19356501 tgtttggtttggcttttaagagttgattctatcctctaaaagcaattatccttaaaactacaaatccttgcttctaatttttctagaatcaattctaca 19356599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 19375471 - 19375409
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    |||||||||||||||| | ||||||||||||||||| ||| | | ||  ||||||||||||||    
T  19375471 ctccaaaagcaattctggatgaagctacaattcctaacttttgagttagctagaatcaattct 19375409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 141 - 370
Target Start/End: Original strand, 38843151 - 38843380
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38843151 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 38843250  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  38843251 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 38843350  T
Q  341 cctgccctcattaatttttctaacccttct 370  Q
    ||||||||||||||||||||||||||||||    
T  38843351 cctgccctcattaatttttctaacccttct 38843380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 140 - 370
Target Start/End: Complemental strand, 51488702 - 51488472
Alignment:
Q  140 tagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 239  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  51488702 tagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttgacttttcaaa 51488603  T
Q  240 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcat 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  51488602 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 51488503  T
Q  340 ccctgccctcattaatttttctaacccttct 370  Q
    |||||||||||||||||||||||||||||||    
T  51488502 ccctgccctcattaatttttctaacccttct 51488472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 141 - 370
Target Start/End: Complemental strand, 7593409 - 7593180
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7593409 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 7593310  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  7593309 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctccaccctcaattctattaattccatc 7593210  T
Q  341 cctgccctcattaatttttctaacccttct 370  Q
    ||||||||||||||||||||||||||||||    
T  7593209 cctgccctcattaatttttctaacccttct 7593180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 141 - 370
Target Start/End: Complemental strand, 50979441 - 50979212
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50979441 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 50979342  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  50979341 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 50979242  T
Q  341 cctgccctcattaatttttctaacccttct 370  Q
    |||| |||||||||||||||||||||||||    
T  50979241 cctgacctcattaatttttctaacccttct 50979212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 142 - 370
Target Start/End: Complemental strand, 5271708 - 5271480
Alignment:
Q  142 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5271708 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 5271609  T
Q  242 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatcc 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5271608 agcttttatcctccaaaagcaattctagttgaagctacaattcctaacttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 5271509  T
Q  342 ctgccctcattaatttttctaacccttct 370  Q
    |||||||||||||||||||||||||||||    
T  5271508 ctgccctcattaatttttctaacccttct 5271480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 139 - 370
Target Start/End: Complemental strand, 27000474 - 27000243
Alignment:
Q  139 ttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaa 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  27000474 ttagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatatttggtttggcttttcaa 27000375  T
Q  239 aatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttca 338  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  27000374 aatagtttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattcca 27000275  T
Q  339 tccctgccctcattaatttttctaacccttct 370  Q
    ||||||||||||||||||||||||||||||||    
T  27000274 tccctgccctcattaatttttctaacccttct 27000243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 141 - 357
Target Start/End: Original strand, 38627538 - 38627754
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627538 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 38627637  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38627638 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 38627737  T
Q  341 cctgccctcattaattt 357  Q
    |||||||||||||||||    
T  38627738 cctgccctcattaattt 38627754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 141 - 358
Target Start/End: Original strand, 26821382 - 26821599
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26821382 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 26821481  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26821482 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 26821581  T
Q  341 cctgccctcattaatttt 358  Q
    ||||||||||||||||||    
T  26821582 cctgccctcattaatttt 26821599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 142 - 357
Target Start/End: Complemental strand, 36496256 - 36496041
Alignment:
Q  142 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36496256 gcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaat 36496157  T
Q  242 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatcc 341  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36496156 agcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccatcc 36496057  T
Q  342 ctgccctcattaattt 357  Q
    ||||||||||||||||    
T  36496056 ctgccctcattaattt 36496041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 140 - 344
Target Start/End: Original strand, 15353227 - 15353431
Alignment:
Q  140 tagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 239  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15353227 tagcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaa 15353326  T
Q  240 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcat 339  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
T  15353327 atagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaattccat 15353426  T
Q  340 ccctg 344  Q
    |||||    
T  15353427 ccctg 15353431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 370 - 482
Target Start/End: Complemental strand, 50978900 - 50978788
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50978900 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 50978801  T
Q  470 tcatcatgatgat 482  Q
    |||||||||||||    
T  50978800 tcatcatgatgat 50978788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 46407610 - 46407722
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||  ||||    
T  46407610 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaattgatattgattttaatgtttatgaagatgaaagcacgatcat 46407709  T
Q  470 tcatcatgatgat 482  Q
    ||| |||||||||    
T  46407710 tcaccatgatgat 46407722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 145 - 327
Target Start/End: Original strand, 27575898 - 27576081
Alignment:
Q  145 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 243  Q
    |||||||||||||||||||| | ||| |||| |||||||  | |||| ||||||||||||| ||| |||| || |||||||||||| ||||||| ||| |    
T  27575898 tctgtttggtttggcttttgtacagctagaagcaattctacaacattccaaaagcaattctacaacatttcaatatgtttggtttgacttttcataattg 27575997  T
Q  244 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 327  Q
    ||| ||||||||||||||||||||   | ||| |||||||  |||||||| ||||| |||||||||||||||||||||||||||    
T  27575998 cttctatcctccaaaagcaattctccataaagttacaatttttagcttctgacttttctagaatcaattctacaccctcaattc 27576081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 35606451 - 35606564
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaa-tgtttatgaagatgaaagcacagtca 468  Q
    ||||||||| ||||||||||||| |||||||||||||||||||||||||| || ||| |||||| |||||||| |||||||||||||||||||||  |||    
T  35606451 ttcaaatagctgtcgcaacaatgactatacacaactttatccgaaggaagacaaaaattgatattgattttaattgtttatgaagatgaaagcacgttca 35606550  T
Q  469 ttcatcatgatgat 482  Q
    ||||||||||||||    
T  35606551 ttcatcatgatgat 35606564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 218 - 317
Target Start/End: Complemental strand, 47655987 - 47655888
Alignment:
Q  218 atgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||||||||||||||| | ||| | || |||||||||||||||||| |  || ||||||||| ||||||||||| ||||| |||||||||||||||||    
T  47655987 atgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccttaaagctacaaatcctagcttctaacttttctagaatcaattctaca 47655888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 483
Target Start/End: Complemental strand, 35569868 - 35569755
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||| ||  || ||||  ||| | ||||||||| |||||||||||||||  ||||||||    
T  35569868 ttcatatagttgtcgcaacaatggcaatacacaactttattagaaagagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcat 35569769  T
Q  470 tcatcatgatgatg 483  Q
    ||| ||||||||||    
T  35569768 tcaccatgatgatg 35569755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 217 - 287
Target Start/End: Complemental strand, 11051262 - 11051192
Alignment:
Q  217 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 287  Q
    ||||||||||||| ||||||||||| |||| |||||||||||| ||||| | |||||| ||||||||||||    
T  11051262 catgtttggtttgacttttcaaaattgcttctatcctccaaaaacaattatggttgaatctacaattccta 11051192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 1762251 - 1762313
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    |||||||||||||||| ||||||||||||||||||| ||| | | ||| ||||||||||||||    
T  1762251 ctccaaaagcaattctggttgaagctacaattcctaacttttaagtttactagaatcaattct 1762313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 6706132 - 6706230
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||| ||||||||||| | ||| | || |||||||||||| ||||| |  || ||||||||| |||||||||||  |||| |||||||||||||||||    
T  6706132 tgtttagtttggcttttaagaattgattctatcctccaaaaacaattatccttaaagctacaaatcctagcttctagcttttctagaatcaattctaca 6706230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 13510038 - 13509940
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||||||| |||||| | ||| | || |||||||||||||||||| |  || |||||| || |||||||||||  |||| |||||||||||||||||    
T  13510038 tgtttggtttagcttttaagaattgattctatcctccaaaagcaattatccttaaagctataaatcctagcttctagcttttctagaatcaattctaca 13509940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 217 - 314
Target Start/End: Original strand, 11829075 - 11829172
Alignment:
Q  217 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    ||||||||||||| ||||| | ||| |||| |||||||||||||||||||| | ||||| || |||||||| ||| | | ||  ||||||||||||||    
T  11829075 catgtttggtttgccttttaagaattgcttctatcctccaaaagcaattctggatgaaggtataattcctaacttttgagttaactagaatcaattct 11829172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 46406421 - 46406519
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||||||||| | ||| | || |||||||||||||||||| |   ||||||||||| || |||||| |  ||||  ||||||||||||||||    
T  46406421 tgtttggtttggcttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcttagcttttggcttttgtagaatcaattctaca 46406519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 35604814 - 35604912
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||| |||| ||||| | ||| |||| |||||||||||| ||||| |  |||||||||||| |  |||||| | |||||  ||||||||||||||||    
T  35604814 tgtttgatttgacttttaagaattgcttctatcctccaaaaacaattatccttgaagctacaaatattagcttttgacttttgtagaatcaattctaca 35604912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 282
Target Start/End: Complemental strand, 46033781 - 46033716
Alignment:
Q  217 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaat 282  Q
    |||||||| |||| ||||||||||| |||| |||||| ||||| |||||||  |||||| ||||||    
T  46033781 catgtttgatttgacttttcaaaattgcttctatccttcaaaaacaattctcattgaagttacaat 46033716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 218; Significance: 1e-119; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 218; E-Value: 1e-119
Query Start/End: Original strand, 141 - 370
Target Start/End: Original strand, 30018773 - 30019002
Alignment:
Q  141 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 240  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30018773 agcctctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatatttaacatgtttggtttggcttttcaaaa 30018872  T
Q  241 tagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattctattaatttcatc 340  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  30018873 tagcttttatcctccaaaagcaattctagttgaagctacaattcctatcttcttactttcctagaatcaattctacaccctcaattctattaattccatc 30018972  T
Q  341 cctgccctcattaatttttctaacccttct 370  Q
    |||| |||||||||||||||||||||||||    
T  30018973 cctgtcctcattaatttttctaacccttct 30019002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 370 - 482
Target Start/End: Original strand, 30019342 - 30019454
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  30019342 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgatagcacagtcat 30019441  T
Q  470 tcatcatgatgat 482  Q
    |||||||||||||    
T  30019442 tcatcatgatgat 30019454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 370 - 482
Target Start/End: Complemental strand, 21515664 - 21515552
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |||||| ||||||||||||||||||||| |||||||  ||||    
T  21515664 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaagtcataaattgatattgattttaatgtttatgaagattaaagcacgatcat 21515565  T
Q  470 tcatcatgatgat 482  Q
    ||| |||||||||    
T  21515564 tcaccatgatgat 21515552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 145 - 327
Target Start/End: Complemental strand, 31746359 - 31746179
Alignment:
Q  145 tctgtttggtttggcttttgcaaagccagaatcaattctggagcatttcaaaagcaattctgcaatattt-aacatgtttggtttggcttttcaaaatag 243  Q
    |||||||||||||||||||| | |   |||| |||||||  | | |||||||||||||||| ||| |||  || |||||||||||| ||||||||||| |    
T  31746359 tctgtttggtttggcttttgtaca---agaagcaattctacaacttttcaaaagcaattctacaacattccaatatgtttggtttgacttttcaaaattg 31746263  T
Q  244 cttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctacaccctcaattc 327  Q
    ||| ||||||||||||||||||||   |  |||||||||||||| ||| |  |||| ||||||||||||||||| |||||||||    
T  31746262 cttctatcctccaaaagcaattctccatatagctacaattcctaacttatggcttttctagaatcaattctacatcctcaattc 31746179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 370 - 483
Target Start/End: Original strand, 16547578 - 16547691
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||| |||||||||||||||||||| ||||||||||||||  ||||||  || ||||  ||| | ||||||||| |||||||||||||||  ||||||||    
T  16547578 ttcatatagttgtcgcaacaatggcaatacacaactttattagaaggagtgctgaaatggatgttgattttaatctttatgaagatgaaaatacagtcat 16547677  T
Q  470 tcatcatgatgatg 483  Q
    ||| ||||||||||    
T  16547678 tcaccatgatgatg 16547691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 217 - 314
Target Start/End: Original strand, 4146810 - 4146907
Alignment:
Q  217 catgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    ||||||||||||||||||||| ||| |||| || || |||||||||||||| | ||||||||||||||||||||| | | ||  ||||||||||||||    
T  4146810 catgtttggtttggcttttcagaattgcttctaccccccaaaagcaattctggatgaagctacaattcctagcttttgagttaactagaatcaattct 4146907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 482
Target Start/End: Complemental strand, 17830730 - 17830618
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||| |||||||||||||||||| | ||||||||||||||  ||||||  || ||||  ||| | ||||| | | |||||||||||||||  ||| ||||    
T  17830730 ttcatatagttgtcgcaacaatgacaatacacaactttattagaaggagtgctgaaatggatgttgatttcagtctttatgaagatgaaaatacaatcat 17830631  T
Q  470 tcatcatgatgat 482  Q
    ||| |||||||||    
T  17830630 tcaccatgatgat 17830618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 219 - 317
Target Start/End: Complemental strand, 21517455 - 21517357
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||| ||||| | ||| | || |||||||||||||||||| |   ||||||||||| ||||||||| |  ||||  ||||||||||||||||    
T  21517455 tgtttggtttgacttttaagaattgattctatcctccaaaagcaattatccatgaagctacaaatcctagcttttggcttttgtagaatcaattctaca 21517357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 252 - 291
Target Start/End: Original strand, 30134180 - 30134219
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagctt 291  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  30134180 ctccaaaagcaattctggttgaagctacaatttctagctt 30134219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 365591 - 365689
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||||||||| ||||| | ||| | || |||| ||||||||||||| |  || ||||||||| ||||| ||||| ||||| ||||| |||||| ||||    
T  365591 tgtttggtttgacttttaagaattgattctatcatccaaaagcaattatccttaaagctacaaatcctaacttctaacttttctagactcaattttaca 365689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 20838560 - 20838498
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    |||||||||||||||| ||||||||||||| ||||| ||| | | ||| ||| ||||||||||    
T  20838560 ctccaaaagcaattctggttgaagctacaaatcctaacttttgagtttactataatcaattct 20838498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 27825057 - 27825119
Alignment:
Q  252 ctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattct 314  Q
    |||||||||||||| | ||||||||||||||||||| ||| | | ||  ||||||||||||||    
T  27825057 ctccaaaagcaattatggttgaagctacaattcctaacttttcagttaactagaatcaattct 27825119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 219 - 287
Target Start/End: Original strand, 16815 - 16883
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattccta 287  Q
    ||||||||||||||||| | ||| | || ||||||||||||||||||||| || |||||||||||||||    
T  16815 tgtttggtttggctttttagaattgattctatcctccaaaagcaattctaattaaagctacaattccta 16883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0394 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0394
Description:

Target: scaffold0394; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 370 - 482
Target Start/End: Complemental strand, 6563 - 6451
Alignment:
Q  370 ttcaaatagttgtcgcaacaatggctatacacaactttatccgaaggaaggcagaaaatgatatggattttaatgtttatgaagatgaaagcacagtcat 469  Q
    |||| |||||||||||||||||| | ||||||||||||||  ||||||  |  ||||  ||| | ||||| ||| |||||||||||||||  ||| ||||    
T  6563 ttcatatagttgtcgcaacaatgacaatacacaactttattagaaggagtgttgaaatggatgttgatttcaatctttatgaagatgaaaatacaatcat 6464  T
Q  470 tcatcatgatgat 482  Q
    ||| |||||||||    
T  6463 tcaccatgatgat 6451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0006 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 220 - 317
Target Start/End: Original strand, 91535 - 91634
Alignment:
Q  220 gtttggtttggcttttcaaaatagcttttatcctccaaaagca--attctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    |||||||||||||||| | ||| | || |||||||||||||||  |||||| || ||||||||||||||| ||| |  ||||| |||||  |||||||||    
T  91535 gtttggtttggctttttagaattgattctatcctccaaaagcaatattctacttaaagctacaattcctaacttttggctttcatagaacaaattctaca 91634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0808 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0808
Description:

Target: scaffold0808; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 219 - 317
Target Start/End: Original strand, 4090 - 4188
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattctaca 317  Q
    ||||| ||||||||||| | ||| | || ||||||| |||||||||| |  || |||||| || |||||||||||  |||| ||| |||||||||||||    
T  4090 tgtttagtttggcttttaagaattgattctatcctcgaaaagcaattatcattaaagctaaaaatcctagcttctagcttttctaaaatcaattctaca 4188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 219 - 315
Target Start/End: Original strand, 37697 - 37791
Alignment:
Q  219 tgtttggtttggcttttcaaaatagcttttatcctccaaaagcaattctagttgaagctacaattcctagcttcttactttcctagaatcaattcta 315  Q
    ||||||||||||||||| | ||| | || |||||||||||| ||||| |  || ||||||||| |  ||||||||  |||| |||||||||||||||    
T  37697 tgtttggtttggcttttaagaattgattctatcctccaaaaacaattatcctttaagctacaaat--tagcttctagcttttctagaatcaattcta 37791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University