View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18794_low_4 (Length: 417)
Name: NF18794_low_4
Description: NF18794
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18794_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 16 - 403
Target Start/End: Complemental strand, 28530858 - 28530471
Alignment:
| Q |
16 |
atggctagcaagcataaacatgagaagatttatgatgaaattagcccttgccgactcaaatatgaatccagttggagacctcccatttagcagagacaaa |
115 |
Q |
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| T |
28530858 |
atggcttgcaagcataaacatgagaagatttatgatgaaattagcccttgccgactcaaatatgaatccagttggagaccttccatttagcagagacaaa |
28530759 |
T |
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| Q |
116 |
atcctaaataatcgtggaatatattgcacaagaatcaccgcacgtagaagattcttagcataatttgctcctgataaacccaagtgccttggtaacacag |
215 |
Q |
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| T |
28530758 |
attctaaataatcttggaatatattgcacaagaatcaccgcacgtagaagattcttagcataatttgctcctgataaacccaagtgcctcggtaacacag |
28530659 |
T |
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| Q |
216 |
ttagtatcattatctgcattcacatatttcactataaatgtcacatggcaatgagtttattgtgcatgtcaacttaatatcgatagttgatttattcaac |
315 |
Q |
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| T |
28530658 |
ttagtatcattatctgcattcacatatttcactataaatatcacatggcaatgagtttattgtgcatgtcaacttaatatcaatagttgatttattcaac |
28530559 |
T |
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| Q |
316 |
aggagttgaatatactcacaatttctaaacttaggattcacgataagtttaacaaaatcacggtggcaccgtgaatactgttaaagtt |
403 |
Q |
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| T |
28530558 |
aggagttgaatatactcacaatttctaaacttaggattcacgataagtttaacaaaatcacggtggcaccgtgaatactgttaaagtt |
28530471 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 26 - 191
Target Start/End: Complemental strand, 28087893 - 28087728
Alignment:
| Q |
26 |
agcataaacatgagaagatttatgatgaaattagcccttgccgactcaaatatgaatccagttggagacctcccatttagcagagacaaaatcctaaata |
125 |
Q |
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| T |
28087893 |
agcataaaaatcagaagatttataatgaaatttgcccaggctgactcgaatatgaatccagttggagactgaccaattagcagaggcaaaaatctgaaca |
28087794 |
T |
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| Q |
126 |
atcgtggaatatattgcacaagaatcaccgcacgtagaagattcttagcataatttgctcctgata |
191 |
Q |
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| T |
28087793 |
atctgggaatatattgaataaggattcctagacgtagaagattcttggcataatttgctcctgata |
28087728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 26 - 199
Target Start/End: Complemental strand, 1436574 - 1436401
Alignment:
| Q |
26 |
agcataaacatgagaagatttatgatgaaattagcccttgccgactcaaatatgaatccagttggagacctcccatttagcagagacaaaatcctaaata |
125 |
Q |
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|||||||| ||||||||||| || |||||||| |||| || || || ||||||||||| ||||||||| ||| ||||||||| ||||| || |||| |
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| T |
1436574 |
agcataaaaatgagaagattaataatgaaatttgcccaggctgattcgaatatgaatccggttggagactgaccaattagcagaggcaaaaatctgaata |
1436475 |
T |
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| Q |
126 |
atcgtggaatatattgcacaagaatcaccgcacgtagaagattcttagcataatttgctcctgataaacccaag |
199 |
Q |
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| T |
1436474 |
atcttggaatatattgtacaaggatccctagtcgtagaagattttttgcataatttgctcctgatgaccccaag |
1436401 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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