View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18795_low_1 (Length: 310)

Name: NF18795_low_1
Description: NF18795
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18795_low_1
NF18795_low_1
[»] chr7 (6 HSPs)
chr7 (74-310)||(6102803-6103041)
chr7 (114-241)||(4257433-4257560)
chr7 (258-310)||(41712378-41712430)
chr7 (173-247)||(42513138-42513212)
chr7 (114-247)||(30456248-30456380)
chr7 (258-310)||(49017213-49017265)
[»] chr4 (7 HSPs)
chr4 (19-310)||(24733455-24733754)
chr4 (29-310)||(12637867-12638148)
chr4 (20-103)||(24736058-24736141)
chr4 (109-310)||(36050600-36050801)
chr4 (109-310)||(36053859-36054060)
chr4 (130-242)||(45735973-45736086)
chr4 (114-181)||(55322485-55322552)
[»] chr2 (6 HSPs)
chr2 (109-306)||(45327420-45327618)
chr2 (27-243)||(28860610-28860823)
chr2 (258-310)||(31211899-31211951)
chr2 (258-310)||(31193263-31193315)
chr2 (273-310)||(40400921-40400958)
chr2 (114-215)||(40401006-40401107)
[»] chr1 (4 HSPs)
chr1 (19-243)||(16544230-16544451)
chr1 (19-210)||(25541200-25541394)
chr1 (109-247)||(23405551-23405689)
chr1 (194-310)||(18583898-18584015)
[»] chr3 (2 HSPs)
chr3 (114-211)||(14029259-14029356)
chr3 (194-247)||(36326511-36326564)
[»] chr8 (5 HSPs)
chr8 (258-310)||(11825086-11825138)
chr8 (109-247)||(44765210-44765348)
chr8 (116-247)||(44761910-44762041)
chr8 (258-303)||(23090090-23090135)
chr8 (200-247)||(14276637-14276685)
[»] chr5 (4 HSPs)
chr5 (194-310)||(24108719-24108836)
chr5 (173-247)||(8123528-8123602)
chr5 (258-310)||(671548-671600)
chr5 (109-147)||(41709470-41709508)
[»] chr6 (2 HSPs)
chr6 (173-247)||(4834719-4834793)
chr6 (173-247)||(33242848-33242922)


Alignment Details
Target: chr7 (Bit Score: 163; Significance: 5e-87; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 74 - 310
Target Start/End: Original strand, 6102803 - 6103041
Alignment:
Q  74 tctagtaaagtaataacgattcaactagttactagaagggtcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagt 173  Q
    ||||||||||||||||||| |||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6102803 tctagtaaagtaataacgactcaactagttaccagaagagtcttttaggcatattctattaggtagttactaagaagcgctattatgtagccattttagt 6102902  T
Q  174 tatcttataatgagcatcctcaagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataataaa--nnnnnnncttttatctctaat 271  Q
    ||||||||||| | ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||         |||||||||||| |    
T  6102903 tatcttataataaacatccccaaacctatataagcattgtatctttcatgattagaatcaatgaaaaatataatgaattttttttgcttttatctctagt 6103002  T
Q  272 tttctctcttaatttatggagtgtgatccctactcgaat 310  Q
    ||||||||||||||||||||||||||| |||||||||||    
T  6103003 tttctctcttaatttatggagtgtgattcctactcgaat 6103041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 114 - 241
Target Start/End: Complemental strand, 4257560 - 4257433
Alignment:
Q  114 tcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgt 213  Q
    |||||||  ||||||||||||| ||||||||||||||||||||| ||||||  || |||||||||||||||||| |||| |||||||||| ||| |||||    
T  4257560 tcttttaaacatattctattagttagttactaagaagcgctattgtgtagctgttgtagttatcttataatgaggatccacaagcctataaaagtattgt 4257461  T
Q  214 atctttcatgattagaatcaatgaaaaa 241  Q
    ||   ||||||||| |||||||||||||    
T  4257460 atgcctcatgattaaaatcaatgaaaaa 4257433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 41712378 - 41712430
Alignment:
Q  258 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaat 310  Q
    ||||| |||||| |||||||||||||||| ||||||||||||| |||||||||    
T  41712378 cttttgtctctagttttctctcttaatttttggagtgtgatccttactcgaat 41712430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 247
Target Start/End: Complemental strand, 42513212 - 42513138
Alignment:
Q  173 ttatcttataatgagcatcctcaagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataat 247  Q
    ||||||||| ||||| || | |||| |||||||||||||||||  || || || |||||||||||||||||||||    
T  42513212 ttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataat 42513138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 247
Target Start/End: Original strand, 30456248 - 30456380
Alignment:
Q  114 tcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgt 213  Q
    ||||||| |||||||||||||| | |||| | || || |||||| |||||   || |||||||||||| ||||| || |  ||| ||||||||||||| |    
T  30456248 tcttttaagcatattctattagtttgttattgagcagtgctattgtgtagttgttgtagttatcttattatgagtatgc-aaagtctatataagcattat 30456346  T
Q  214 atctttcatgattagaatcaatgaaaaatataat 247  Q
    ||   | ||||||||||  |||||||||||||||    
T  30456347 atgccttatgattagaacgaatgaaaaatataat 30456380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 49017213 - 49017265
Alignment:
Q  258 cttttatctctaattttctctct-taatttatggagtgtgatccctactcgaat 310  Q
    |||||||||||| ||| |||||| ||||||||||||||||||||||| ||||||    
T  49017213 cttttatctctagttt-ctctctctaatttatggagtgtgatccctattcgaat 49017265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 24733455 - 24733754
Alignment:
Q  19 gaagtcccaaagagcgtataatcccgaagagagattcatgggtgactcattttattctagtaaagtaataacgattcaactagttactagaagggtcttt 118  Q
    |||||| ||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |||    
T  24733455 gaagtcgcaaagagcgtacaatctcgaagtgagattcatgggtgactcattttattctagtaaagtaataacgactcaactagtttctagaagggtattt 24733554  T
Q  119 taggcatattctattagatagttactaagaagcgctattatgtagccattttagttatctta-------taatgagcatcctcaagcctatataagcatt 211  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||       |||||||||||| || |||||||||||||||    
T  24733555 taggcctattctattagttagttactaagaagcgctattatgtagccattgtagttatcttataatgactaatgagcatccacatgcctatataagcatt 24733654  T
Q  212 gtatctttcatgattagaatcaatgaaaaatataat-aaannnnnnncttttatctctaattttctctcttaatttatggagtgtgatccctactcgaat 310  Q
    |||| ||||||||||||||  ||||||||||||||| ||        ||||||| |||| |||||||||||||| | |  ||||||||||||||| ||||    
T  24733655 gtatgtttcatgattagaaggaatgaaaaatataatgaatttcctttcttttatatctagttttctctcttaatatctaaagtgtgatccctacttgaat 24733754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 29 - 310
Target Start/End: Original strand, 12637867 - 12638148
Alignment:
Q  29 agagcgtataatcccgaagagagattcatgggtgact-cattttattctagtaaagtaataacgattcaactagttactagaagggtcttttaggcatat 127  Q
    |||||||| || |||||||| || ||||||||||||| ||| |||||||||||||  ||||| || ||  |||| | |||| ||| ||||||| ||||||    
T  12637867 agagcgtacaagcccgaagaaaggttcatgggtgacttcatcttattctagtaaaagaataatgactcggctagattctaggaggatcttttaagcatat 12637966  T
Q  128 tctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgtatctttcatgatta 227  Q
    |||||||| |||| |||||||||||||||| ||||||| || |||||||||||||||||| |||| ||||| |||| |||||||||||   ||||||| |    
T  12637967 tctattagttagtgactaagaagcgctattgtgtagccgttgtagttatcttataatgaggatccacaagcttataaaagcattgtatgcctcatgataa 12638066  T
Q  228 gaatcaatgaaaaatataataaannnnnnncttttatctctaattttctctcttaatttatggagtgtgatccctactcgaat 310  Q
     ||||||||||||||| |  ||        ||||||| ||||  ||||||||||||||| ||||||| ||| |||||||||||    
T  12638067 taatcaatgaaaaata-acaaatttcctttcttttatatctagatttctctcttaatttctggagtgcgatacctactcgaat 12638148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 20 - 103
Target Start/End: Original strand, 24736058 - 24736141
Alignment:
Q  20 aagtcccaaagagcgtataatcccgaagagagattcatgggtgactcattttattctagtaaagtaataacgattcaactagtt 103  Q
    |||||||||||||| || |||||||||  ||||||||| |||||||||||||||| ||||||||||||||||| ||||||||||    
T  24736058 aagtcccaaagagcatacaatcccgaaaggagattcataggtgactcattttattttagtaaagtaataacgactcaactagtt 24736141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 310
Target Start/End: Original strand, 36050600 - 36050801
Alignment:
Q  109 aagggtcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagc 208  Q
    |||| |||||||||||||||||||||| ||||||||||| |  ||||||  |||||| || |||||| ||||  ||| | || | |||| |||||||| |    
T  36050600 aaggatcttttaggcatattctattagttagttactaagcaatgctattgcgtagccgttgtagttagcttactatgtgtatgcacaagtctatataaac 36050699  T
Q  209 attgtatctttcatgattagaatcaatgaaaaatataataaannnnnnn-cttttatctctaattttctctcttaatttatggagtgtgatccctactcg 307  Q
    |||||||   | || || ||    ||||||||||||||| ||        |||||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  36050700 attgtatgccttattatgaggga-aatgaaaaatataatgaatttcttttcttttatctctagttttctcttttaatttttggagtgtgatccctactcg 36050798  T
Q  308 aat 310  Q
    |||    
T  36050799 aat 36050801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 109 - 310
Target Start/End: Original strand, 36053859 - 36054060
Alignment:
Q  109 aagggtcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagc 208  Q
    |||| |||||||||||||||||||||| ||||||||||| |  ||||||  |||||| || |||||| ||||  ||| | || | |||| |||||||| |    
T  36053859 aaggatcttttaggcatattctattagttagttactaagcaatgctattgcgtagccgttgtagttagcttactatgtgtatgcacaagtctatataaac 36053958  T
Q  209 attgtatctttcatgattagaatcaatgaaaaatataataaannnnnnn-cttttatctctaattttctctcttaatttatggagtgtgatccctactcg 307  Q
    |||||||   | || || ||    ||||||||||||||| ||        |||||||||||| |||||||| ||||||| ||||||||||||||||||||    
T  36053959 attgtatgccttattatgaggga-aatgaaaaatataatgaatttcttttcttttatctctagttttctcttttaatttttggagtgtgatccctactcg 36054057  T
Q  308 aat 310  Q
    |||    
T  36054058 aat 36054060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 242
Target Start/End: Original strand, 45735973 - 45736086
Alignment:
Q  130 tattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgtatctttcat-gattag 228  Q
    |||||| ||||||||||||||  ||||| |||| || || ||||||| |||| |||||||| | |||  ||| |||||||||||||   |||| ||||||    
T  45735973 tattagttagttactaagaagttctattgtgtaaccgttgtagttatattattatgagcattcacaaatctacataagcattgtatgcctcatagattag 45736072  T
Q  229 aatcaatgaaaaat 242  Q
    ||||||||||||||    
T  45736073 aatcaatgaaaaat 45736086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 114 - 181
Target Start/End: Complemental strand, 55322552 - 55322485
Alignment:
Q  114 tcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttat 181  Q
    |||||||||||||||||||||| |||||| |||| || |||||| |||||  ||| ||||||||||||    
T  55322552 tcttttaggcatattctattagttagttattaagcagtgctattgtgtagttattgtagttatcttat 55322485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 109 - 306
Target Start/End: Complemental strand, 45327618 - 45327420
Alignment:
Q  109 aagggtcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagc 208  Q
    |||| |||||||||||||||||||||| ||||||||||| |   ||||| ||||||| || |||||||||||  ||| | || | |||| ||||||||||    
T  45327618 aaggatcttttaggcatattctattagttagttactaagcaatactattgtgtagccgttgtagttatcttactatgtgtatgcacaagtctatataagc 45327519  T
Q  209 attgtatctttcatgattagaatcaatgaaaaatataataaa-nnnnnnncttttatctctaattttctctcttaatttatggagtgtgatccctactc 306  Q
    ||||||| | | || || ||||  ||||||||||||||||||        ||||||||||||||||||||||||||||| |||||||||||||||||||    
T  45327518 attgtatgtcttattatgagaaaaaatgaaaaatataataaatttcttttcttttatctctaattttctctcttaatttctggagtgtgatccctactc 45327420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 27 - 243
Target Start/End: Original strand, 28860610 - 28860823
Alignment:
Q  27 aaagagcgtataatcccgaagagagattcatgggtgactcattttattctagtaaagtaataacgattcaactagttactagaagggtcttttaggcata 126  Q
    |||||||||| || ||||||||||| | ||||| |||||||| |||||||||||||  ||||| || ||| ||||||  ||||||| |||||||||||||    
T  28860610 aaagagcgtacaagcccgaagagaggtacatgg-tgactcatcttattctagtaaaa-aataatgactcatctagtttttagaaggatcttttaggcata 28860707  T
Q  127 ttctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgtatctttcatgatt 226  Q
    || |||||| ||||||||||||| || |||| |   ||| || ||| |||||||||||||| |||| ||| |||||| |||||  | ||   ||||||||    
T  28860708 ttatattagttagttactaagaaacgttattgtacggccgttgtag-tatcttataatgaggatccacaaacctataaaagcaccgaatgcctcatgatt 28860806  T
Q  227 agaatcaatgaaaaata 243  Q
    | |||||||||||||||    
T  28860807 aaaatcaatgaaaaata 28860823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 31211899 - 31211951
Alignment:
Q  258 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaat 310  Q
    |||||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  31211899 cttttatctctagttttctctcttaatttctggagtgtgatccctactcgaat 31211951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 31193263 - 31193315
Alignment:
Q  258 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaat 310  Q
    |||| ||||||| |||||||||||||||| | |||||||||||||||||||||    
T  31193263 ctttcatctctagttttctctcttaatttctagagtgtgatccctactcgaat 31193315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 273 - 310
Target Start/End: Complemental strand, 40400958 - 40400921
Alignment:
Q  273 ttctctcttaatttatggagtgtgatccctactcgaat 310  Q
    |||||||| ||||| |||||||||||||||||||||||    
T  40400958 ttctctctaaatttctggagtgtgatccctactcgaat 40400921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 40401107 - 40401006
Alignment:
Q  114 tcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgt 213  Q
    ||||||| ||||||||| |||| |||||| |||| |  |||||||| ||| | || |||||||||||| ||||| || | |||| |||| ||||||| ||    
T  40401107 tcttttaagcatattctcttagttagttattaagcactgctattatatagtcgttgtagttatcttatcatgagtatgcacaagtctatttaagcatagt 40401008  T
Q  214 at 215  Q
    ||    
T  40401007 at 40401006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 9e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 16544230 - 16544451
Alignment:
Q  19 gaagtcccaaagagcgtataatcccgaagagagattcatgggtgactcattttattctagtaaagtaataacgattcaactagttactagaagggtcttt 118  Q
    |||||| |||||||| || ||  | |||||||| |||||  ||||||| | | |||||||||||  || ||||| |||| |||||  ||||||| |||||    
T  16544230 gaagtcacaaagagcatacaagtctgaagagaggttcataagtgactcgtctcattctagtaaaagaagaacgactcaagtagtttttagaaggatcttt 16544329  T
Q  119 taggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgtatctt 218  Q
    |||||||| |||| ||| ||||||||||||||||||||||||| |||||| |||||||||||  ||||  |||| ||||| |||| |||| |||||   |    
T  16544330 taggcatactctactagttagttactaagaagcgctattatgtggccattgtagttatcttacgatgaagatccacaagcatataaaagccttgta---t 16544426  T
Q  219 tcatgattagaatcaatgaaaaata 243  Q
     ||| |||| |||||||||||||||    
T  16544427 gcatcattataatcaatgaaaaata 16544451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 19 - 210
Target Start/End: Complemental strand, 25541394 - 25541200
Alignment:
Q  19 gaagtcccaaagagcgtataatcccgaagagagattcatgggtgactc--attttattctagtaaagtaataacgattcaactagttactagaagggtct 116  Q
    |||||| ||||||||||| || | ||||||||| ||||||||||||||  || ||||| ||| |||   |||| || ||| || ||| ||| |||| |||    
T  25541394 gaagtcacaaagagcgtacaagctcgaagagaggttcatgggtgactctcatcttattatagcaaaaggataatgactcagctggtttctaaaaggatct 25541295  T
Q  117 tttaggcatattctattagatagtt-actaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcat 210  Q
    |||||   |||| |||||| ||||| ||||||||| |||||| | ||||| || |||||||| ||||||||| |||| ||||| |||| ||||||    
T  25541294 tttagatgtattttattaggtagtttactaagaagtgctattgtatagccgttgtagttatcctataatgaggatccacaagcttataaaagcat 25541200  T

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Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 109 - 247
Target Start/End: Complemental strand, 23405689 - 23405551
Alignment:
Q  109 aagggtcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagc 208  Q
    |||| |||||||||||||||||||||| ||||||||||| |   ||||| ||||||| || |||||||||||  ||| | || | |||| |||| ||| |    
T  23405689 aaggatcttttaggcatattctattagttagttactaagcaatactattgtgtagccgttgtagttatcttactatgtgtatgcacaagtctatctaaac 23405590  T
Q  209 attgtatctttcatgattagaatcaatgaaaaatataat 247  Q
    |||||||   | || || |||||||||||||||||||||    
T  23405589 attgtatgccttattatgagaatcaatgaaaaatataat 23405551  T

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Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 310
Target Start/End: Complemental strand, 18584015 - 18583898
Alignment:
Q  194 caagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataataaannnnnnn-cttttatctctaattttctctcttaatttatggag 292  Q
    |||| |||||||||||||||||  || || || ||||||||||||||||||| | ||        |||||||||||| |||||||||||||||| |||||    
T  18584015 caagtctatataagcattgtatgctttattatgagaatcaatgaaaaatatactgaatttcctttcttttatctctagttttctctcttaatttctggag 18583916  T
Q  293 tgtgatccctactcgaat 310  Q
    ||| ||| ||||||||||    
T  18583915 tgtaatctctactcgaat 18583898  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 114 - 211
Target Start/End: Original strand, 14029259 - 14029356
Alignment:
Q  114 tcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcatt 211  Q
    ||||||| |||||||||||||| ||||||||||| || | |||| ||||||| || |||||||||||||||||| || | ||||||||||||| ||||    
T  14029259 tcttttaagcatattctattagttagttactaagcagtgttattgtgtagccgttgtagttatcttataatgagtatgcacaagcctatataaacatt 14029356  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 194 - 247
Target Start/End: Original strand, 36326511 - 36326564
Alignment:
Q  194 caagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataat 247  Q
    |||| |||||||||||||||||  || || || |||||||||||||||||||||    
T  36326511 caagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataat 36326564  T

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Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 11825086 - 11825138
Alignment:
Q  258 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaat 310  Q
    ||||||||| |||||||||||||||||||||||||||||||||||| ||||||    
T  11825086 cttttatctttaattttctctcttaatttatggagtgtgatccctattcgaat 11825138  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 109 - 247
Target Start/End: Original strand, 44765210 - 44765348
Alignment:
Q  109 aagggtcttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagc 208  Q
    |||| |||||||||||||||||||||| ||||||||||| |  ||||||  |||||| || |||||| ||||  ||| | || | |||| |||||||| |    
T  44765210 aaggatcttttaggcatattctattagttagttactaagcaatgctattgcgtagccgttgtagttagcttactatgtgtatgcacaagtctatataaac 44765309  T
Q  209 attgtatctttcatgattagaatcaatgaaaaatataat 247  Q
    |||||||   | || || | |||||||||||||||||||    
T  44765310 attgtattccttattatgaaaatcaatgaaaaatataat 44765348  T

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Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 116 - 247
Target Start/End: Original strand, 44761910 - 44762041
Alignment:
Q  116 ttttaggcatattctattagatagttactaagaagcgctattatgtagccattttagttatcttataatgagcatcctcaagcctatataagcattgtat 215  Q
    |||||| ||||||||||||| ||||||||||| |  |||||| ||||||| || |||||| ||||  ||| | || | |||| |||||||| ||||||||    
T  44761910 ttttagacatattctattagttagttactaagcaatgctattgtgtagccgttgtagttagcttactatgtgtatgcacaagtctatataaacattgtat 44762009  T
Q  216 ctttcatgattagaatcaatgaaaaatataat 247  Q
       | || || | |||||||||||||||||||    
T  44762010 gccttattatgaaaatcaatgaaaaatataat 44762041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 303
Target Start/End: Original strand, 23090090 - 23090135
Alignment:
Q  258 cttttatctctaattttctctcttaatttatggagtgtgatcccta 303  Q
    ||||||||||| |||||||||| |||||||||||||| ||| ||||    
T  23090090 cttttatctctgattttctctcataatttatggagtgcgattccta 23090135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 247
Target Start/End: Complemental strand, 14276685 - 14276637
Alignment:
Q  200 tatataagcattgta-tctttcatgattagaatcaatgaaaaatataat 247  Q
    ||||||||||||||| |  |||||||||| |||||||||||||||||||    
T  14276685 tatataagcattgtaatgcttcatgattaaaatcaatgaaaaatataat 14276637  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 194 - 310
Target Start/End: Original strand, 24108719 - 24108836
Alignment:
Q  194 caagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataataaannnnnnnct-tttatctctaattttctctcttaatttatggag 292  Q
    |||| ||||||||||||||||| | | |||||||||| |||||||||||||||| ||        | ||| |||||| ||||||  |||||||| |||||    
T  24108719 caagtctatataagcattgtatgtcttatgattagaaccaatgaaaaatataatgaatttccttttgtttgtctctagttttcttccttaatttctggag 24108818  T
Q  293 tgtgatccctactcgaat 310  Q
    ||||||||||||||||||    
T  24108819 tgtgatccctactcgaat 24108836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 8123528 - 8123602
Alignment:
Q  173 ttatcttataatgagcatcctcaagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataat 247  Q
    ||||||||| ||||| || | |||| |||||||||||||||||  || || || |||||||||||||||||||||    
T  8123528 ttatcttattatgagtatgcacaagtctatataagcattgtatgctttattatgagaatcaatgaaaaatataat 8123602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 310
Target Start/End: Original strand, 671548 - 671600
Alignment:
Q  258 cttttatctctaattttctctcttaatttatggagtgtgatccctactcgaat 310  Q
    ||||||||||||  ||||||||||||||| || ||||||||||| ||||||||    
T  671548 cttttatctctagctttctctcttaatttctgaagtgtgatcccaactcgaat 671600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 109 - 147
Target Start/End: Original strand, 41709470 - 41709508
Alignment:
Q  109 aagggtcttttaggcatattctattagatagttactaag 147  Q
    |||| |||||||||||||||||||||| |||||||||||    
T  41709470 aaggatcttttaggcatattctattagttagttactaag 41709508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 4834719 - 4834793
Alignment:
Q  173 ttatcttataatgagcatcctcaagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataat 247  Q
    ||||||||| ||||| || |  ||| |||||||||||||||||   |||| ||||||||||||||||||||||||    
T  4834719 ttatcttattatgagtatgcataagtctatataagcattgtatgcctcattattagaatcaatgaaaaatataat 4834793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 173 - 247
Target Start/End: Original strand, 33242848 - 33242922
Alignment:
Q  173 ttatcttataatgagcatcctcaagcctatataagcattgtatctttcatgattagaatcaatgaaaaatataat 247  Q
    ||||||||| ||||| || | |||| |||||||||||||||||   | || || |||||||||||||||||||||    
T  33242848 ttatcttattatgagtatgcacaagtctatataagcattgtatgccttattatgagaatcaatgaaaaatataat 33242922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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