View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_high_1 (Length: 898)
Name: NF18796_high_1
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 371; Significance: 0; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 180 - 615
Target Start/End: Complemental strand, 52446168 - 52445741
Alignment:
| Q |
180 |
tgcactgcgactatgaatcatcaataataaaatgaaacaatctaaaaagaacaaaaccagagacacgtacattgcgattgaaattgtgaatcatccataa |
279 |
Q |
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| T |
52446168 |
tgcactgcgactatgaatcatcaatgataaaatgaaacaatctaaaaagaacaaaaccagagacacatacattgtgattgaaattgtgaatcatccataa |
52446069 |
T |
|
| Q |
280 |
attgaaacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaacataactatacattatgattgtgaacagagcatcaactcaaccaa |
379 |
Q |
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| T |
52446068 |
attgaaacaatagaaagatgtaaataaacgccaataataaaataatgaacatcaacacaactatacattatgattgtgaacagagtatcaactcgaccaa |
52445969 |
T |
|
| Q |
380 |
agcattatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatcatacgtgtcacggttcaaactcatatcatgaggttcgacctaga |
479 |
Q |
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| T |
52445968 |
agcattatacaacaacacatgaag--------agtaaatcaaacatcaacatcatcatacgtgtcagggttcaaactcatatcatgaggttcgacctaga |
52445877 |
T |
|
| Q |
480 |
aattttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaa |
579 |
Q |
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| T |
52445876 |
aattttgatatttttacatgtttagttaaaacttttagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaa |
52445777 |
T |
|
| Q |
580 |
ggataaggtgtgtataaatatgtctttaattaaatc |
615 |
Q |
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| T |
52445776 |
ggataaggtgtgtataaatatgtctttaattaaatc |
52445741 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 613 - 881
Target Start/End: Complemental strand, 52445451 - 52445181
Alignment:
| Q |
613 |
atctccgatggaggtccttaccattgctggtggattgctccaa--gtttgtggttgatggattcgtggacattgttgcatttcctttgccttgcctgatt |
710 |
Q |
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| T |
52445451 |
atctccgacggaggtccttaccattgctggtggattgctccaacagtttgtggttgatggattcgtggacattgttgcatttcctttgccttgcctgatt |
52445352 |
T |
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| Q |
711 |
atcatgtgtctgaaaatatcgttctcgtggacaaatttaagtatgttagaaaggtcatactttacaaaggagtggctgagcatgaatatcatatggatgt |
810 |
Q |
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| T |
52445351 |
attatgtgtccgaagatctcgttctcgtggacaaatttaagtatgttagaaaggtcatactttacgaaggagtggctgagcatggatatcatatggatgt |
52445252 |
T |
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| Q |
811 |
catcaagaatgacattgtgtacgagcatgacatggctgacaagtccgtggagcagtgcatgatgcaaatta |
881 |
Q |
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| T |
52445251 |
catcaagaatgacattatgtacgagcatgacatggctgacaagtacgtggagcagtgcatgatgcaaatta |
52445181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 140; E-Value: 7e-73
Query Start/End: Original strand, 185 - 564
Target Start/End: Complemental strand, 52447099 - 52446722
Alignment:
| Q |
185 |
tgcgactatgaatcatcaataataaaatgaaacaatctaaaaagaacaaaaccagagacacgtacattgcgattgaaattgtgaatcatccataaattga |
284 |
Q |
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||||| ||||||||||||||||||||||||||||||||| ||| |||||||| | |||| | |||| | ||||||||||| |||||||| |||||| | |
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| T |
52447099 |
tgcgattatgaatcatcaataataaaatgaaacaatctacaaa---caaaaccacatacacatccattactattgaaattgt-aatcatccctaaattaa |
52447004 |
T |
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| Q |
285 |
aacaatagaaagatgtaaataaacaccaataataaaataatgaacatcaacataactatacattatgattgtgaacagagcatcaactcaaccaaagcat |
384 |
Q |
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| T |
52447003 |
aacaataaaaacgtgtaaataaacaccaataatagaacaatgaacatcaacataaccatacattacgattgtggatagagcatcaactcaattgaagcat |
52446904 |
T |
|
| Q |
385 |
tatacaacaacacatgaagtcatgaagagtaaatcaaacatcaacatcatcat----------acgtgtcacggttcaaactcatatcatgaggttcgac |
474 |
Q |
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| T |
52446903 |
tatacaacaaca--------cacggagagtaaatcaaacatcaatatcatcgtacataagtgaacgtatcaaggttcaaactcatatcatgaggtccgac |
52446812 |
T |
|
| Q |
475 |
ctagaaattttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatat |
564 |
Q |
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||||| |||| ||||||||||||||||| ||||||||||||||| || ||||||| || |||| |||||| ||| ||||||||||||| |
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| T |
52446811 |
ctagagatttcaatatttttacatgtttacctaaaacttgtagacagatatgttagtgcttaataatttgtatgaataaattaaacatat |
52446722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 481 - 610
Target Start/End: Complemental strand, 52447786 - 52447657
Alignment:
| Q |
481 |
attttgatatttttacatgtttagttaaaacttgtagacaaatgtgttagtactcaatagtttgtaagaagaaattaaacatattgatattcaattaaag |
580 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||| |||| || || |||||||| ||||||||||||||| |||| |||||||||||| |
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| T |
52447786 |
attttgatatttttacatgtttagttcaaacttgtagacaaatgtgctagtgcttaaaagtttgtatgaagaaattaaacatgttgaaattcaattaaag |
52447687 |
T |
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| Q |
581 |
gataaggtgtgtataaatatgtctttaatt |
610 |
Q |
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|||||| ||||||| |||||| ||||||| |
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| T |
52447686 |
gataagatgtgtattaatatgaatttaatt |
52447657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 77; E-Value: 3e-35
Query Start/End: Original strand, 22 - 110
Target Start/End: Complemental strand, 52446326 - 52446238
Alignment:
| Q |
22 |
aaataaaatctcaaaagagtaactgggagagcttccaaatcaacatgcacaacaacaatcaccattaagcaaccaagaacttcactctg |
110 |
Q |
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| T |
52446326 |
aaatcaaatctcaaaagagtaactgggagaacttccaaatcaacatgcacaacaataatcaccattaagcaaccaagaacttcactctg |
52446238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 52447268 - 52447177
Alignment:
| Q |
16 |
atccataaataaaatctcaaaagagtaactgggagagcttccaaatcaacatgcacaacaacaatcaccattaagcaaccaagaacttcact |
107 |
Q |
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|||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |||||||| |||||||||| ||||||||| |
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| T |
52447268 |
atccataaataaaatctcaaaagagtaattgagagagcttccaaatgaacatgcacaacagtaatcaccagcaagcaaccaataacttcact |
52447177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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