View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18796_high_11 (Length: 463)

Name: NF18796_high_11
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18796_high_11
NF18796_high_11
[»] chr7 (17 HSPs)
chr7 (49-439)||(23619647-23620033)
chr7 (49-428)||(23607371-23607744)
chr7 (288-439)||(23625456-23625605)
chr7 (75-237)||(23578756-23578917)
chr7 (288-413)||(23614704-23614829)
chr7 (290-397)||(23584733-23584840)
chr7 (62-229)||(23614944-23615107)
chr7 (50-229)||(23625722-23625902)
chr7 (299-406)||(23578480-23578587)
chr7 (87-261)||(23584976-23585149)
chr7 (353-433)||(23600060-23600140)
chr7 (364-428)||(23566130-23566194)
chr7 (164-234)||(23606225-23606293)
chr7 (314-347)||(23572943-23572976)
chr7 (352-428)||(23572834-23572910)
chr7 (314-347)||(23566238-23566271)
chr7 (352-428)||(23589926-23590001)


Alignment Details
Target: chr7 (Bit Score: 321; Significance: 0; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 49 - 439
Target Start/End: Complemental strand, 23620033 - 23619647
Alignment:
Q  49 acatattgattgagacattttgttaggaacaagtgatctatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaat 148  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||       ||||||||||| |||||    
T  23620033 acatattgattgagacattttgttaggaacaagtgatctatatacttttcaggaaagcagtcaagtgaagaatcttaaaaaaatgattgccaaaaccaat 23619934  T
Q  149 catagtcgaatatatttgaagcacaatataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattcctcccttatattgtttgct 248  Q
    |||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  23619933 cataatggaatatatttgaagcacaatataaactcctatgatgatacagatgaatctcaatcaaacctaactcaagcattcctcccttatagtgtttgct 23619834  T
Q  249 cattctctctctttctttaatttcttgtactcccatgcctgttgaatgatgatatattgggatttgatgggataatctgcatcctgaggtttagaacaac 348  Q
    ||||||||    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23619833 cattctct----ttctttaatttcttgtactcccatacctgttgaatgatgatatattgggatttgatgggataatctgcatcctgaggtttagaacaac 23619738  T
Q  349 aaatgcgtaattgtatctaagccttggaatgcagattatctcttccttatcaccaatgcaaaactatgaaatcaatttgacagttcccatt 439  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23619737 aaatgcgtaattatatctaagccttggaatgcagattatctcttccttatcaccaatgcaaaactatgaaatcaatttgacagttcccatt 23619647  T

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Target: chr7; HSP #2
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 49 - 428
Target Start/End: Complemental strand, 23607744 - 23607371
Alignment:
Q  49 acatattgattgagacattttgttaggaacaagtgatctatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaat 148  Q
    ||||||||| || ||||||||||  ||||||||||||||||||||||||||||||||| |||||||||||||||||       ||||||  ||| |||||    
T  23607744 acatattgaatgtgacattttgtccggaacaagtgatctatatacttttcaggaaagcggtcaagttaagaatcttaaaaaaatgattggtaaaaccaat 23607645  T
Q  149 catagtcgaatatatttgaagcacaatataaattcctatgatgatacagatgaatctcaat---caaacctaactcaagcattcctcccttatattgttt 245  Q
    |||| ||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||   |||||||||||||||||||| ||||||| | |||||    
T  23607644 cataatcgaatatatttgaagcacaatataaactcctatggtgatgcagatgaatctcaataatcaaacctaactcaagcattcttcccttagaatgttt 23607545  T
Q  246 gctcattctctctctttctttaatttcttgtactcccatgcctgttgaatgatgatatattgggatttgatgggataatctgcatcctgaggtttagaac 345  Q
     ||||| |||| |         |||||||||||||| || | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||    
T  23607544 tctcatgctcttt---------atttcttgtactcctatacttgttgaatgatgatatattgggattcgattggataatctgcatcctgaggtttagaac 23607454  T
Q  346 aacaaatgcgtaattgtatctaagccttggaatgcagattatctcttccttatcaccaatgcaaaactatgaaatcaatttga 428  Q
    |||| |||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23607453 aacagatgcgtaattctatctaagccttgggatgctgattatctcttccttatcaccaatgcaaaactatgaaatcaatttga 23607371  T

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Target: chr7; HSP #3
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 288 - 439
Target Start/End: Complemental strand, 23625605 - 23625456
Alignment:
Q  288 tgttgaatgatgatatattgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaattgtatctaagccttggaatgcagattat 387  Q
    |||||||||| |||||||||||||  |||| ||||||||||||||||||||||||||||||  |||||| | ||| ||||||||||||||||||||||||    
T  23625605 tgttgaatgaggatatattgggatcagatgagataatctgcatcctgaggtttagaacaaccgatgcgtcactgtgtctaagccttggaatgcagattat 23625506  T
Q  388 ctcttccttatcaccaatgcaaaactatgaaatcaatttgacagttcccatt 439  Q
    |||||||||||||||||||||||||  ||||||||| |||| |||| |||||    
T  23625505 ctcttccttatcaccaatgcaaaac--tgaaatcaacttgatagtttccatt 23625456  T

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Target: chr7; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 75 - 237
Target Start/End: Complemental strand, 23578917 - 23578756
Alignment:
Q  75 gaacaagtgatctatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaatcatagtcgaatatatttgaagcacaa 174  Q
    |||||||||||||||||||||||| ||||||| |||||||||||||||||       ||||||| ||  ||||||  | |||||||||| ||||||||||    
T  23578917 gaacaagtgatctatatacttttctggaaagcggtcaagttaagaatcttgaaaaaatgattgc-aaccccaatctaaatcgaatatatatgaagcacaa 23578819  T
Q  175 tataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattcctccctta 237  Q
    |||||| |||||||||||| |||| || ||||||||||||| ||||||||||||| |||||||    
T  23578818 tataaactcctatgatgatgcagacgactctcaatcaaacccaactcaagcattcttccctta 23578756  T

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Target: chr7; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 288 - 413
Target Start/End: Complemental strand, 23614829 - 23614704
Alignment:
Q  288 tgttgaatgatgatatattgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaattgtatctaagccttggaatgcagattat 387  Q
    ||||||| || |||| ||||||||  |||| |||||||||||||||||||||||||||||   |||||||| |||||||||||||| |||||||||||||    
T  23614829 tgttgaacgaggatagattgggatcagatgagataatctgcatcctgaggtttagaacaatcgatgcgtaactgtatctaagccttagaatgcagattat 23614730  T
Q  388 ctcttccttatcaccaatgcaaaact 413  Q
    ||||||||||||||||||||| ||||    
T  23614729 ctcttccttatcaccaatgcagaact 23614704  T

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Target: chr7; HSP #6
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 290 - 397
Target Start/End: Complemental strand, 23584840 - 23584733
Alignment:
Q  290 ttgaatgatgatatattgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaattgtatctaagccttggaatgcagattatct 389  Q
    |||||||| ||||||||||| || |||||| |||||||||||||||||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||    
T  23584840 ttgaatgaggatatattgggtttggatggggtaatctgcatcctgaggtttagaataacagctgcgtaattgtatctaagccttggagtgcagattatct 23584741  T
Q  390 cttcctta 397  Q
    ||||||||    
T  23584740 cttcctta 23584733  T

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Target: chr7; HSP #7
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 62 - 229
Target Start/End: Complemental strand, 23615107 - 23614944
Alignment:
Q  62 gacattttgttaggaacaagtgatctatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaatcatagtcgaatat 161  Q
    |||||||||| | ||||||||||||| |||||||||||||||||| |||||||||||||||         ||||||     ||||||| || ||||||||    
T  23615107 gacattttgtcaagaacaagtgatctttatacttttcaggaaagcggtcaagttaagaatccaaaaaaaatgattgg----tccaatcttaatcgaatat 23615012  T
Q  162 atttgaagcacaatataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattc 229  Q
    ||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||| ||| ||||    
T  23615011 atttgaagcacaatataaactcctatgatgatgcagatgactctcaatcaaacctaactaaagtattc 23614944  T

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Target: chr7; HSP #8
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 50 - 229
Target Start/End: Complemental strand, 23625902 - 23625722
Alignment:
Q  50 catattgattgagacattttgttaggaacaagtgatctatata--cttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaa 147  Q
    |||||||| || |||| ||||| | ||||||||||| ||||||  |||||||||||||| ||||||||||||||| |       |||||| ||| |||||    
T  23625902 catattgaatgtgacaatttgtcaagaacaagtgatttatatatacttttcaggaaagcggtcaagttaagaatcctaaaaaaatgattggcaa-tccaa 23625804  T
Q  148 tcatagtcgaatatatttgaagcacaatataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattc 229  Q
    || || | ||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||| ||||||||||| ||||    
T  23625803 tcttaatggaatatatttgaagcacaatataaactcctatgatgatgcagatgactctcaatcaagcctaactcaagtattc 23625722  T

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Target: chr7; HSP #9
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 299 - 406
Target Start/End: Complemental strand, 23578587 - 23578480
Alignment:
Q  299 gatatattgggatttgatgggataatctgcatcctgaggtttagaacaacaaatgcgtaattgtatctaagccttggaatgcagattatctcttccttat 398  Q
    ||||||||| | || ||| ||||||||||||||||||||||||||| ||||  ||||||||||||||||||||||||| ||||||||||||||||||||     
T  23578587 gatatattgagtttggataggataatctgcatcctgaggtttagaataacagctgcgtaattgtatctaagccttggagtgcagattatctcttccttaa 23578488  T
Q  399 caccaatg 406  Q
    ||||||||    
T  23578487 caccaatg 23578480  T

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Target: chr7; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 87 - 261
Target Start/End: Complemental strand, 23585149 - 23584976
Alignment:
Q  87 tatatacttttcaggaaagcagtcaagttaagaatcttnnnnnnntgattgccaaatccaatcatagtcgaatatatttgaagcacaatataaattccta 186  Q
    ||||||||||||| |||||  ||||||||||||||||        ||||||| | | |||||| || |||||||||| ||||||||||||||||||||||    
T  23585149 tatatacttttcaagaaagtggtcaagttaagaatctaaagaaaatgattgcaaca-ccaatcttaatcgaatatatatgaagcacaatataaattccta 23585051  T
Q  187 tgatgatacagatgaatctcaatcaaacctaactcaagcattcctcccttatattgtttgctcattctctctctt 261  Q
    ||||||| ||||||| ||||||||||||||||||| ||||||| || | |||| | ||| ||||| |||||||||    
T  23585050 tgatgatgcagatgactctcaatcaaacctaactctagcattcttctcatatagtattttctcatgctctctctt 23584976  T

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Target: chr7; HSP #11
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 353 - 433
Target Start/End: Complemental strand, 23600140 - 23600060
Alignment:
Q  353 gcgtaattgtatctaagccttggaatgcagattatctcttccttatcaccaatgcaaaactatgaaatcaatttgacagtt 433  Q
    |||||||||| ||||||||||||| |||||||||||| |||||||||||||||||| ||  ||||||||||| ||| ||||    
T  23600140 gcgtaattgtttctaagccttggagtgcagattatcttttccttatcaccaatgcataataatgaaatcaatatgatagtt 23600060  T

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Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 364 - 428
Target Start/End: Complemental strand, 23566194 - 23566130
Alignment:
Q  364 tctaagccttggaatgcagattatctcttccttatcaccaatgcaaaactatgaaatcaatttga 428  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||| ||  |||||||||||||||    
T  23566194 tctaagccttggagtgcagattatcttttccttatcacctatgcagaataatgaaatcaatttga 23566130  T

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Target: chr7; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 164 - 234
Target Start/End: Complemental strand, 23606293 - 23606225
Alignment:
Q  164 ttgaagcacaatataaattcctatgatgatacagatgaatctcaatcaaacctaactcaagcattcctccc 234  Q
    ||||||||||||||||| |||||||||||| | |||||  |||||||||||||||||| ||||||| ||||    
T  23606293 ttgaagcacaatataaactcctatgatgatgctgatga--ctcaatcaaacctaactccagcattcttccc 23606225  T

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Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 23572976 - 23572943
Alignment:
Q  314 gatgggataatctgcatcctgaggtttagaacaa 347  Q
    ||||||||||||||||||||||||||||||||||    
T  23572976 gatgggataatctgcatcctgaggtttagaacaa 23572943  T

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Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 352 - 428
Target Start/End: Complemental strand, 23572910 - 23572834
Alignment:
Q  352 tgcgtaattgtatctaagccttggaatgcagattatctcttccttatcaccaatgcaaaactatgaaatcaatttga 428  Q
    ||||||||||| ||||||||||||| || ||||||| | ||||||| || ||||||| ||  || ||||||||||||    
T  23572910 tgcgtaattgtttctaagccttggattgtagattattttttccttaacatcaatgcagaataattaaatcaatttga 23572834  T

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Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 314 - 347
Target Start/End: Complemental strand, 23566271 - 23566238
Alignment:
Q  314 gatgggataatctgcatcctgaggtttagaacaa 347  Q
    |||||||||||||||||||||||||||| |||||    
T  23566271 gatgggataatctgcatcctgaggtttaaaacaa 23566238  T

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Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 352 - 428
Target Start/End: Complemental strand, 23590001 - 23589926
Alignment:
Q  352 tgcgtaattgtatctaagccttggaatgcagattatctcttccttatcaccaatgcaaaactatgaaatcaatttga 428  Q
    |||||||| || ||||||||| ||| ||| |||||||| ||||| |||||||||||| ||  |||||||||| ||||    
T  23590001 tgcgtaatcgtttctaagcctcggagtgcggattatcttttcct-atcaccaatgcagaataatgaaatcaaattga 23589926  T

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