View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_high_12 (Length: 461)
Name: NF18796_high_12
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 416
Target Start/End: Original strand, 2478701 - 2479100
Alignment:
| Q |
17 |
accggaacattgttgagcttaaaggtgcttatgaggatcgtcattcggttaatcttatcatggagctttgtgctggtggtgagctttttgataggattat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2478701 |
accggaacattgttgagcttaaaggtgcttatgaggatcgtcattcggttaatcttatcatggagctttgtgctggtggtgagctttttgataggattat |
2478800 |
T |
|
| Q |
117 |
atccaaaggtcattactctgaacgtgctgcggctgagctgtgtcgccagattgtcactgttgttcataattgtcatactatgggtgttatgcatagggat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2478801 |
atccaaaggtcattactctgaacgtgctgcggctgagctgtgtcgccagattgtcactgttgttcataattgtcatactatgggtgttatgcatagggat |
2478900 |
T |
|
| Q |
217 |
ttgaagcctgagaatttcttgtttcttagtaagcatgagaattcgccgcttaaagctaccgattttggtctctccgtgtttttcaaacccggttagtaag |
316 |
Q |
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| T |
2478901 |
ttgaagcctgagaatttcttgtttcttagtaagcatgagaattcgccgcttaaagctacagattttggtctctccgtgtttttcaagcccggttagtaag |
2479000 |
T |
|
| Q |
317 |
ctcgttttagcttaactaagtgtgtgtttagtattgcgatgacaaataataattttagtacatatttggatttaaagttattttatcctggtgagtgtag |
416 |
Q |
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| T |
2479001 |
ctcgttttagcttaactaagtgtgtgtttagtattgcgatgacaaataataattttagtacatatttggatttaaagttattttatcctggtgagtgtag |
2479100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 40531996 - 40532087
Alignment:
| Q |
25 |
attgttgagcttaaaggtgcttatgaggatcgtcattcggttaatcttatcatggagctttgtgctggtggtgagctttttgataggattat |
116 |
Q |
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| T |
40531996 |
attgttgagtttaaaggtgcttatgaggataaaaattcagttcatgttgtaatggaactttgtgctggtggtgaactttttgacaggattat |
40532087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 239
Target Start/End: Original strand, 40536961 - 40537175
Alignment:
| Q |
25 |
attgttgagcttaaaggtgcttatgaggatcgtcattcggttaatcttatcatggagctttgtgctggtggtgagctttttgataggattatatccaaag |
124 |
Q |
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||||||||| |||||||||||||||||||| |||| ||| || || | ||||| ||||||||||||||||| |||| ||||| |||||| |||||| |
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| T |
40536961 |
attgttgagtttaaaggtgcttatgaggatgaaaattcagttcatgttgttatggaactttgtgctggtggtgaactttatgatacgattattgccaaag |
40537060 |
T |
|
| Q |
125 |
gtcattactctgaacgtgctgcggctgagctgtgtcgccagattgtcactgttgttcataattgtcatactatgggtgttatgcatagggatttgaagcc |
224 |
Q |
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| | || |||| | | ||| ||| | | | | || ||||| | ||||||||||| ||||||| ||||||||| |||||||| ||||||||||| |
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| T |
40537061 |
ggaaatatagtgaaagagatgcagcttcaatttttagacaaattgttaatgttgttcatatttgtcattttatgggtgtgatgcatagagatttgaagcc |
40537160 |
T |
|
| Q |
225 |
tgagaatttcttgtt |
239 |
Q |
| |
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|| ||||||||||| |
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| T |
40537161 |
agaaaatttcttgtt |
40537175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 40532137 - 40532210
Alignment:
| Q |
166 |
attgtcactgttgttcataattgtcatactatgggtgttatgcatagggatttgaagcctgagaatttcttgtt |
239 |
Q |
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| T |
40532137 |
attgttaatgttgttcatatttgtcattttatgggtgtgatgcatagagatttgaaaccagaaaatttcttgtt |
40532210 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 176 - 233
Target Start/End: Complemental strand, 38810262 - 38810205
Alignment:
| Q |
176 |
ttgttcataattgtcatactatgggtgttatgcatagggatttgaagcctgagaattt |
233 |
Q |
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| T |
38810262 |
ttgttcatacttgtcattccatgggtgttattcatagagatcttaagcctgagaattt |
38810205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 22 - 311
Target Start/End: Complemental strand, 41623209 - 41622920
Alignment:
| Q |
22 |
aacattgttgagcttaaaggtgcttatgaggatcgtcattcggttaatcttatcatggagctttgtgctggtggtgagctttttgataggattatatcca |
121 |
Q |
| |
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||||||||||| || |||||||||||||||||| || || ||||| ||| | ||||||||||||||||||||||| ||||||||| ||||||| || |
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| T |
41623209 |
aacattgttgaactcaaaggtgcttatgaggataaacactctgttaaccttgttatggagctttgtgctggtggtgaactttttgatcggattattctca |
41623110 |
T |
|
| Q |
122 |
aaggtcattactctgaacgtgctgcggctgagctgtgtcgccagattgtcactgttgttcataattgtcatactatgggtgttatgcatagggatttgaa |
221 |
Q |
| |
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|||| |||||||||||||||||||| ||| | || ||||| |||||||| || |||||||||||||||||||||||||| |||||||||||||| ||||| |
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| T |
41623109 |
aaggacattactctgaacgtgctgctgctaatctttgtcgtcagattgttacggttgttcataattgtcatactatgggagttatgcatagggacttgaa |
41623010 |
T |
|
| Q |
222 |
gcctgagaatttcttgtttcttagtaagcatgagaattcgccgcttaaagctaccgattttggtctctccgtgtttttcaaacccggtta |
311 |
Q |
| |
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||||||||||||||||||||| |||| | || |||||||| || || || || |||||||||||||| ||||||||||| || ||||| |
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| T |
41623009 |
acctgagaatttcttgtttcttggtaaagaagaaaattcgcctctcaaggccacggattttggtctctctgtgtttttcaagccaggtta |
41622920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 25 - 239
Target Start/End: Original strand, 20501316 - 20501530
Alignment:
| Q |
25 |
attgttgagcttaaaggtgcttatgaggatcgtcattcggttaatcttatcatggagctttgtgctggtggtgagctttttgataggattatatccaaag |
124 |
Q |
| |
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|||||||| ||||||| |||||||||||| | |||| ||| || || | ||||| ||||||||||||||||| |||||||||||||| || | |||| |
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| T |
20501316 |
attgttgaatttaaaggagcttatgaggataggaattcagttcatgttgttatggaactttgtgctggtggtgaactttttgataggatcattgctaaag |
20501415 |
T |
|
| Q |
125 |
gtcattactctgaacgtgctgcggctgagctgtgtcgccagattgtcactgttgttcataattgtcatactatgggtgttatgcatagggatttgaagcc |
224 |
Q |
| |
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| ||||| |||| ||||| ||| | ||| | |||||||| | ||||||| ||| ||||||| |||||| ||||||||||||||| |||| || |
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| T |
20501416 |
gacattatagtgaaaaagctgctgcttctatttgtagacagattgttaatgttgttaatatttgtcattttatgggagttatgcatagggatctgaaacc |
20501515 |
T |
|
| Q |
225 |
tgagaatttcttgtt |
239 |
Q |
| |
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|||||||||||||| |
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| T |
20501516 |
agagaatttcttgtt |
20501530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 186 - 254
Target Start/End: Original strand, 55168268 - 55168336
Alignment:
| Q |
186 |
ttgtcatactatgggtgttatgcatagggatttgaagcctgagaatttcttgtttcttagtaagcatga |
254 |
Q |
| |
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||||||| |||||||||| ||||| | |||||||||||||||||||||||| || ||||||| |||| |
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| T |
55168268 |
ttgtcattttatgggtgttttgcatcgcgatttgaagcctgagaatttcttgctttctagtaaggatga |
55168336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 55168107 - 55168198
Alignment:
| Q |
25 |
attgttgagcttaaaggtgcttatgaggatcgtcattcggttaatcttatcatggagctttgtgctggtggtgagctttttgataggattat |
116 |
Q |
| |
|
||||||||| |||||||||||| ||||||| | || || ||||| | ||||| |||||||||||||||||| | |||||||||||||| |
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| T |
55168107 |
attgttgagtttaaaggtgcttttgaggatagattctctgtgcatcttgtgatggaactttgtgctggtggtgagttgtttgataggattat |
55168198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 76 - 117
Target Start/End: Original strand, 24042554 - 24042595
Alignment:
| Q |
76 |
atggagctttgtgctggtggtgagctttttgataggattata |
117 |
Q |
| |
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|||||| | |||||||||||||||||||| |||||||||||| |
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| T |
24042554 |
atggagttatgtgctggtggtgagcttttcgataggattata |
24042595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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