View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18796_high_18 (Length: 391)

Name: NF18796_high_18
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18796_high_18
NF18796_high_18
[»] chr4 (59 HSPs)
chr4 (18-254)||(48708134-48708364)
chr4 (272-372)||(31297030-31297130)
chr4 (186-372)||(44890518-44890722)
chr4 (289-372)||(23987043-23987126)
chr4 (186-252)||(25937671-25937737)
chr4 (49-146)||(28606909-28607006)
chr4 (49-146)||(28611671-28611768)
chr4 (187-250)||(4219559-4219622)
chr4 (186-252)||(11153625-11153691)
chr4 (186-252)||(25938149-25938215)
chr4 (290-372)||(55189649-55189731)
chr4 (187-252)||(2118295-2118360)
chr4 (49-146)||(14174102-14174199)
chr4 (49-146)||(14178856-14178953)
chr4 (188-249)||(22434657-22434718)
chr4 (183-252)||(44892626-44892695)
chr4 (186-252)||(15523236-15523302)
chr4 (186-252)||(23494921-23494987)
chr4 (186-252)||(45082902-45082968)
chr4 (186-252)||(46193406-46193472)
chr4 (187-252)||(18763998-18764063)
chr4 (187-252)||(23494445-23494510)
chr4 (203-267)||(43243745-43243807)
chr4 (203-252)||(43281268-43281317)
chr4 (187-252)||(46193883-46193948)
chr4 (181-254)||(51021271-51021344)
chr4 (188-252)||(16690939-16691003)
chr4 (186-252)||(12234807-12234873)
chr4 (186-252)||(20470989-20471055)
chr4 (186-252)||(20958337-20958403)
chr4 (186-252)||(22434180-22434246)
chr4 (186-252)||(25447248-25447314)
chr4 (186-252)||(25447714-25447780)
chr4 (188-250)||(54995547-54995609)
chr4 (187-252)||(33109686-33109751)
chr4 (49-138)||(44161757-44161846)
chr4 (174-266)||(48713812-48713902)
chr4 (180-252)||(33109942-33110014)
chr4 (192-266)||(20957196-20957268)
chr4 (269-372)||(43242372-43242475)
chr4 (263-318)||(44892542-44892597)
chr4 (263-334)||(48708391-48708462)
chr4 (186-252)||(10258365-10258431)
chr4 (186-252)||(15523712-15523778)
chr4 (186-252)||(16318254-16318320)
chr4 (187-252)||(38962297-38962362)
chr4 (186-266)||(48295009-48295087)
chr4 (188-252)||(4220037-4220101)
chr4 (188-252)||(48526659-48526723)
chr4 (186-241)||(16691560-16691615)
chr4 (98-145)||(48826849-48826896)
chr4 (186-252)||(12234330-12234396)
chr4 (327-372)||(10258227-10258272)
chr4 (186-235)||(35363096-35363145)
chr4 (188-241)||(40160580-40160633)
chr4 (263-311)||(43281192-43281240)
chr4 (186-230)||(48293595-48293639)
chr4 (263-311)||(48293690-48293738)
chr4 (188-252)||(54995072-54995136)
[»] chr6 (30 HSPs)
chr6 (186-252)||(2319673-2319739)
chr6 (186-252)||(23075606-23075672)
chr6 (186-252)||(31470794-31470860)
chr6 (186-250)||(1149912-1149976)
chr6 (187-266)||(29035103-29035180)
chr6 (186-252)||(10900408-10900474)
chr6 (186-252)||(11445465-11445531)
chr6 (186-252)||(12935158-12935224)
chr6 (186-252)||(15828119-15828185)
chr6 (186-252)||(20741101-20741167)
chr6 (186-252)||(22219831-22219897)
chr6 (186-252)||(28472638-28472704)
chr6 (186-252)||(29859827-29859893)
chr6 (188-252)||(18504922-18504986)
chr6 (186-250)||(23074000-23074064)
chr6 (188-266)||(3835192-3835268)
chr6 (186-252)||(1149466-1149532)
chr6 (186-252)||(11277060-11277126)
chr6 (186-252)||(18257138-18257204)
chr6 (186-252)||(31470316-31470382)
chr6 (188-252)||(10899942-10900006)
chr6 (186-252)||(11444988-11445054)
chr6 (186-252)||(12935635-12935701)
chr6 (186-252)||(18257615-18257681)
chr6 (186-252)||(20741582-20741648)
chr6 (263-372)||(29034978-29035086)
chr6 (186-250)||(4811373-4811437)
chr6 (184-252)||(18505397-18505465)
chr6 (182-252)||(2322696-2322766)
chr6 (186-252)||(15827639-15827705)
[»] chr2 (43 HSPs)
chr2 (186-252)||(1978109-1978175)
chr2 (182-252)||(35781141-35781211)
chr2 (175-252)||(11090998-11091075)
chr2 (187-252)||(14432619-14432684)
chr2 (181-252)||(22374316-22374387)
chr2 (186-252)||(1978587-1978653)
chr2 (186-266)||(35779709-35779787)
chr2 (263-372)||(35779804-35779913)
chr2 (186-252)||(22374803-22374869)
chr2 (186-252)||(28616614-28616680)
chr2 (186-252)||(40027141-40027207)
chr2 (187-252)||(15551501-15551566)
chr2 (291-372)||(20440372-20440453)
chr2 (187-252)||(40815347-40815412)
chr2 (184-252)||(239830-239898)
chr2 (188-252)||(8425358-8425422)
chr2 (187-266)||(8972239-8972316)
chr2 (188-252)||(40027618-40027682)
chr2 (188-252)||(40815823-40815887)
chr2 (174-252)||(11090510-11090588)
chr2 (186-252)||(18450831-18450897)
chr2 (186-252)||(18451309-18451375)
chr2 (186-252)||(20440509-20440575)
chr2 (186-252)||(20444750-20444816)
chr2 (186-252)||(26538557-26538623)
chr2 (186-252)||(28847173-28847239)
chr2 (191-252)||(3025472-3025533)
chr2 (186-252)||(239354-239419)
chr2 (186-252)||(7446824-7446890)
chr2 (188-250)||(8425840-8425902)
chr2 (186-252)||(26538098-26538164)
chr2 (186-252)||(28617092-28617158)
chr2 (186-252)||(43058810-43058876)
chr2 (287-372)||(3824050-3824134)
chr2 (288-367)||(5035984-5036063)
chr2 (186-252)||(3025940-3026005)
chr2 (186-252)||(7446343-7446409)
chr2 (186-252)||(43058334-43058400)
chr2 (49-146)||(8539350-8539447)
chr2 (188-236)||(63459-63507)
chr2 (312-372)||(2189275-2189335)
chr2 (186-238)||(4355756-4355808)
chr2 (187-266)||(15552520-15552596)
[»] chr5 (34 HSPs)
chr5 (182-266)||(4222188-4222270)
chr5 (187-252)||(2864756-2864821)
chr5 (49-146)||(29106978-29107075)
chr5 (181-252)||(2865233-2865304)
chr5 (186-252)||(5819407-5819473)
chr5 (186-252)||(7348560-7348626)
chr5 (186-252)||(8647439-8647505)
chr5 (186-252)||(15708972-15709038)
chr5 (186-252)||(18183447-18183513)
chr5 (186-252)||(19359614-19359680)
chr5 (186-252)||(29454741-29454807)
chr5 (188-252)||(5818932-5818996)
chr5 (188-252)||(15372351-15372415)
chr5 (188-252)||(18182973-18183037)
chr5 (186-252)||(8647916-8647982)
chr5 (186-252)||(24362314-24362380)
chr5 (49-146)||(42911093-42911189)
chr5 (186-250)||(19359137-19359201)
chr5 (186-264)||(6018315-6018391)
chr5 (186-252)||(164192-164258)
chr5 (186-252)||(7349495-7349561)
chr5 (186-252)||(8461409-8461475)
chr5 (186-252)||(14215721-14215787)
chr5 (186-252)||(24331560-24331626)
chr5 (186-252)||(29455220-29455286)
chr5 (187-252)||(14215243-14215308)
chr5 (186-250)||(16018590-16018654)
chr5 (186-241)||(15709457-15709512)
chr5 (186-252)||(4219664-4219730)
chr5 (186-252)||(8460931-8460997)
chr5 (186-252)||(25000567-25000633)
chr5 (186-266)||(4623149-4623227)
chr5 (327-372)||(6018473-6018518)
chr5 (186-230)||(14464020-14464064)
[»] scaffold0295 (1 HSPs)
scaffold0295 (186-252)||(4794-4860)
[»] chr3 (42 HSPs)
chr3 (186-252)||(24301034-24301100)
chr3 (185-266)||(32697166-32697245)
chr3 (186-252)||(39555579-39555645)
chr3 (290-372)||(51474673-51474755)
chr3 (186-250)||(25853235-25853299)
chr3 (181-252)||(31779130-31779201)
chr3 (186-252)||(4275842-4275908)
chr3 (186-266)||(23228474-23228551)
chr3 (186-252)||(23644463-23644529)
chr3 (186-252)||(32535441-32535507)
chr3 (186-252)||(39556055-39556121)
chr3 (186-250)||(20840561-20840625)
chr3 (188-252)||(26837363-26837427)
chr3 (186-252)||(17464492-17464558)
chr3 (186-252)||(20841039-20841105)
chr3 (186-252)||(27393662-27393728)
chr3 (186-252)||(27394055-27394121)
chr3 (186-252)||(30104483-30104549)
chr3 (186-252)||(37222049-37222115)
chr3 (186-252)||(43973442-43973508)
chr3 (186-252)||(43973918-43973984)
chr3 (186-252)||(48452990-48453056)
chr3 (186-266)||(51473429-51473507)
chr3 (188-252)||(26274570-26274634)
chr3 (188-252)||(32534962-32535026)
chr3 (171-250)||(5137461-5137540)
chr3 (186-252)||(23644943-23645009)
chr3 (188-250)||(25612457-25612519)
chr3 (186-252)||(29801894-29801960)
chr3 (186-252)||(30098241-30098307)
chr3 (186-252)||(31778654-31778720)
chr3 (186-252)||(37727408-37727474)
chr3 (186-252)||(51474812-51474878)
chr3 (189-252)||(22425291-22425354)
chr3 (186-236)||(17464986-17465036)
chr3 (186-252)||(29801357-29801423)
chr3 (187-252)||(25853705-25853770)
chr3 (186-235)||(26837850-26837899)
chr3 (263-311)||(25612378-25612426)
chr3 (188-252)||(26275044-26275108)
chr3 (263-311)||(37220653-37220701)
chr3 (186-246)||(50116893-50116953)
[»] chr1 (37 HSPs)
chr1 (186-252)||(18984597-18984663)
chr1 (186-252)||(26859060-26859126)
chr1 (49-146)||(34907304-34907401)
chr1 (181-252)||(5539812-5539883)
chr1 (181-252)||(8678537-8678608)
chr1 (187-250)||(47826966-47827029)
chr1 (186-252)||(15646193-15646259)
chr1 (186-252)||(29870097-29870163)
chr1 (187-252)||(17433693-17433758)
chr1 (187-252)||(33144397-33144462)
chr1 (186-252)||(4636449-4636515)
chr1 (186-252)||(5540296-5540362)
chr1 (188-250)||(5963058-5963120)
chr1 (186-252)||(8679019-8679085)
chr1 (186-252)||(18984120-18984186)
chr1 (186-252)||(29306954-29307020)
chr1 (186-252)||(29869621-29869687)
chr1 (186-252)||(39154498-39154564)
chr1 (186-252)||(50970756-50970822)
chr1 (210-266)||(47827054-47827108)
chr1 (180-249)||(50970273-50970342)
chr1 (313-372)||(12227636-12227695)
chr1 (181-252)||(15173572-15173642)
chr1 (193-252)||(33143925-33143984)
chr1 (186-252)||(2733435-2733501)
chr1 (186-252)||(9018974-9019040)
chr1 (186-252)||(9019441-9019507)
chr1 (188-250)||(15173099-15173161)
chr1 (186-252)||(15646673-15646739)
chr1 (186-252)||(21856521-21856587)
chr1 (186-252)||(29307420-29307486)
chr1 (186-252)||(52268291-52268357)
chr1 (183-252)||(5962576-5962645)
chr1 (187-252)||(21856044-21856109)
chr1 (186-252)||(17433217-17433283)
chr1 (187-252)||(39154021-39154086)
chr1 (288-372)||(52269090-52269174)
[»] chr8 (29 HSPs)
chr8 (186-251)||(11656456-11656521)
chr8 (49-146)||(12930841-12930938)
chr8 (49-146)||(12935587-12935684)
chr8 (186-252)||(13225117-13225183)
chr8 (186-252)||(41681135-41681201)
chr8 (188-252)||(33328161-33328225)
chr8 (186-252)||(9178113-9178179)
chr8 (186-252)||(19176291-19176357)
chr8 (186-252)||(19176768-19176834)
chr8 (186-252)||(31133698-31133764)
chr8 (186-252)||(33742923-33742989)
chr8 (186-252)||(34541026-34541092)
chr8 (186-252)||(44831248-44831314)
chr8 (187-252)||(33328618-33328683)
chr8 (186-250)||(9930137-9930201)
chr8 (84-143)||(26504985-26505044)
chr8 (186-236)||(11656951-11657001)
chr8 (186-252)||(12571864-12571930)
chr8 (186-252)||(31133221-31133287)
chr8 (186-252)||(41681612-41681678)
chr8 (301-370)||(2617942-2618011)
chr8 (188-252)||(9928912-9928976)
chr8 (188-252)||(12572329-12572393)
chr8 (189-252)||(13224645-13224707)
chr8 (198-252)||(8074029-8074083)
chr8 (186-252)||(11337000-11337066)
chr8 (186-252)||(44831723-44831789)
chr8 (287-372)||(8073894-8073977)
chr8 (186-238)||(599533-599585)
[»] scaffold1585 (1 HSPs)
scaffold1585 (186-252)||(568-634)
[»] chr7 (25 HSPs)
chr7 (186-252)||(19590526-19590592)
chr7 (186-252)||(34533792-34533858)
chr7 (186-252)||(38859119-38859185)
chr7 (49-146)||(37040529-37040626)
chr7 (188-252)||(19830423-19830487)
chr7 (186-252)||(23952731-23952798)
chr7 (269-372)||(28583541-28583644)
chr7 (181-252)||(35289379-35289450)
chr7 (186-252)||(19591003-19591069)
chr7 (186-252)||(32004615-32004681)
chr7 (186-252)||(37786768-37786834)
chr7 (182-266)||(28584388-28584470)
chr7 (186-266)||(38160952-38161030)
chr7 (186-250)||(2658840-2658904)
chr7 (186-250)||(32005094-32005158)
chr7 (186-252)||(19830897-19830963)
chr7 (186-252)||(35288904-35288970)
chr7 (188-252)||(4478178-4478242)
chr7 (181-252)||(28583435-28583506)
chr7 (197-252)||(29099862-29099917)
chr7 (186-249)||(37787248-37787311)
chr7 (186-252)||(2659318-2659384)
chr7 (186-252)||(38858644-38858710)
chr7 (85-146)||(15290393-15290454)
chr7 (188-236)||(4641443-4641491)
[»] scaffold0951 (2 HSPs)
scaffold0951 (186-252)||(1668-1734)
scaffold0951 (186-252)||(2145-2211)
[»] scaffold0417 (1 HSPs)
scaffold0417 (186-252)||(11101-11167)
[»] scaffold0176 (2 HSPs)
scaffold0176 (186-252)||(18836-18902)
scaffold0176 (186-252)||(19099-19165)
[»] scaffold0019 (1 HSPs)
scaffold0019 (186-248)||(134155-134217)
[»] scaffold0432 (2 HSPs)
scaffold0432 (188-248)||(9935-9995)
scaffold0432 (188-252)||(10350-10414)
[»] scaffold0057 (3 HSPs)
scaffold0057 (186-250)||(61029-61093)
scaffold0057 (263-337)||(61833-61907)
scaffold0057 (188-250)||(61938-62000)
[»] scaffold1223 (2 HSPs)
scaffold1223 (186-252)||(1219-1285)
scaffold1223 (187-252)||(755-820)
[»] scaffold0273 (1 HSPs)
scaffold0273 (186-252)||(4685-4751)
[»] scaffold0007 (1 HSPs)
scaffold0007 (188-252)||(64783-64847)
[»] scaffold1696 (1 HSPs)
scaffold1696 (189-252)||(454-516)


Alignment Details
Target: chr4 (Bit Score: 170; Significance: 4e-91; HSPs: 59)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 18 - 254
Target Start/End: Original strand, 48708134 - 48708364
Alignment:
Q  18 gtggtggcgatataattaaataccaatacccatatttaacatgaaaaactctataatactaagagaaaaaccacatgacaaactccaaaaaatatttcat 117  Q
    |||||||||||| |||||||||||||||      |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  48708134 gtggtggcgataaaattaaataccaata------tttaacatgaaaaactctataatactaagagaaaaaccacgtgacaaactccaaaaaatatttcat 48708227  T
Q  118 tatattaaaaaatattacaatattctctcacggtctcacctctctcttggatgcacaatattgaataagcttaattacatttttggtccttgtgttttag 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||| |    
T  48708228 tatattaaaaaatattacaatattctctcacggtctcacctctctcttggatgcacaatattgaataggcttaattacacttttggtccatgtgttttgg 48708327  T
Q  218 cctactcacgaaaatggtcatgccattttaaaacaca 254  Q
    ||||  |||||||||| || |||| ||||||||||||    
T  48708328 cctaaccacgaaaatgatcctgcccttttaaaacaca 48708364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 272 - 372
Target Start/End: Complemental strand, 31297130 - 31297030
Alignment:
Q  272 ttttcatcctaccatccattttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacatgtcatt 371  Q
    |||||||| || | ||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||| | ||||||||||    
T  31297130 ttttcatcataacctccattttaccctccaaaaacgctgagatggcaaatgaacacctatgtggcattgccaacttggaatataacactaacatgtcatt 31297031  T
Q  372 a 372  Q
    |    
T  31297030 a 31297030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 186 - 372
Target Start/End: Original strand, 44890518 - 44890722
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaa--------------------ttg 265  Q
    ||||||||||| ||||||||||||||||||  |||| ||||||||||||||||||| ||||||||||  ||||||||                    |||    
T  44890518 gcttaattacaattttggtccttgtgttttgacctattcacgaaaatggtcatgcccttttaaaaca--gaacaaaaatatcctttaattatattttttg 44890615  T
Q  266 ttacatttttcatcctaccatccattttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacat 365  Q
    || ||||||||||| ||||  ||||||||||||||||||||||||| ||||||||  || |||||||||||| |||||| | ||||||| ||||| ||||    
T  44890616 ttgcatttttcatcataccccccattttatcctcaaaaaacgctgatatggcaaagaaatacctatgtggcagtgccaaccgggaaaatgacattaacat 44890715  T
Q  366 gtcatta 372  Q
    |||||||    
T  44890716 gtcatta 44890722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 289 - 372
Target Start/End: Complemental strand, 23987126 - 23987043
Alignment:
Q  289 attttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacatgtcatta 372  Q
    ||||| |||||||||||  |||||||| |||||||||||||||||||||||||||| ||| ||||| ||||| |||||||||||    
T  23987126 attttctcctcaaaaaattctgagatgacaaatgaacacctatgtggcattgccaatctgaaaaatgacattaacatgtcatta 23987043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 25937671 - 25937737
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||||||||||||||| |||||||||||||||||||||| ||||| |||| ||||||||||    
T  25937671 gcttaattacatttttggtcctcgtgttttagcctactcacgaaactggtcctgcccttttaaaaca 25937737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 28606909 - 28607006
Alignment:
Q  49 atatttaacatgaaaaactctataatactaagagaaaaaccacatgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 146  Q
    ||||||||| |||||||| || ||||||  || ||||||||||  |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  28606909 atatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 28607006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 28611671 - 28611768
Alignment:
Q  49 atatttaacatgaaaaactctataatactaagagaaaaaccacatgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 146  Q
    ||||||||| |||||||| || ||||||  || ||||||||||  |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  28611671 atatttaacgtgaaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 28611768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 4219559 - 4219622
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| ||||| |||||||||||||    
T  4219559 cttaattacatttttggtcctcgtgttttggcctactcacgaaactggtcctgccattttaaaa 4219622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 11153691 - 11153625
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||    
T  11153691 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgccattttaaaaca 11153625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 25938215 - 25938149
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||    
T  25938215 gcttaattacacttttggtccttgtgttttggcctactcacgaaattggtcctgcccttttaaaaca 25938149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 372
Target Start/End: Original strand, 55189649 - 55189731
Alignment:
Q  290 ttttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacatgtcatta 372  Q
    |||||||||| ||||| ||  ||||||||||||||  |||||||||| ||||||| |||||||||| ||||||||||||||||    
T  55189649 ttttatcctctaaaaaagcacagatggcaaatgaaggcctatgtggcgttgccaatctggaaaatatcatttacatgtcatta 55189731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 2118295 - 2118360
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||| |||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||    
T  2118295 cttaattacacttttggtccttgtgttttggcctactcacgaaattggtcctgcccttttaaaaca 2118360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 14174199 - 14174102
Alignment:
Q  49 atatttaacatgaaaaactctataatactaagagaaaaaccacatgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 146  Q
    ||||||||| || ||||| || ||||||  || ||||||||||  |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  14174199 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 14174102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 14178953 - 14178856
Alignment:
Q  49 atatttaacatgaaaaactctataatactaagagaaaaaccacatgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 146  Q
    ||||||||| || ||||| || ||||||  || ||||||||||  |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  14178953 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 14178856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 188 - 249
Target Start/End: Complemental strand, 22434718 - 22434657
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaa 249  Q
    |||||||||||||||||||| ||||||| |||||||||||||| ||||| ||||||||||||    
T  22434718 ttaattacatttttggtcctcgtgttttggcctactcacgaaactggtcctgccattttaaa 22434657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 44892695 - 44892626
Alignment:
Q  183 taagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||||| |||||||||||| |||||||  ||||||||||||||||||  |||||||||||||||    
T  44892695 taagcttaattatatttttggtcctcgtgttttgacctactcacgaaaatggttctgccattttaaaaca 44892626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 15523236 - 15523302
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  15523236 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 15523302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 23494987 - 23494921
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  23494987 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 23494921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 45082968 - 45082902
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| || ||||||||||| |||||||||| ||||||||||    
T  45082968 gcttaattacacttttggtcctcgtgttttggcttactcacgaaactggtcatgcccttttaaaaca 45082902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 46193406 - 46193472
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  46193406 gcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcctgcccttttaaaaca 46193472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 18764063 - 18763998
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||| |||||||||| ||||||| |||||||||||||| |||||||| | ||||||||||    
T  18764063 cttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgtccttttaaaaca 18763998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 23494445 - 23494510
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||||||||||||| ||||||| |||||||||||||| | ||| |||| ||||||||||    
T  23494445 cttaattacatttttggtcctcgtgttttggcctactcacgaaactagtcctgcccttttaaaaca 23494510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 203 - 267
Target Start/End: Complemental strand, 43243807 - 43243745
Alignment:
Q  203 gtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgtt 267  Q
    ||||| ||||||| ||||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  43243807 gtcctcgtgttttggcctactcacgaaaatggtcatgcccttttaaa--acagaacaaaattgtt 43243745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 43281317 - 43281268
Alignment:
Q  203 gtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||||||    
T  43281317 gtcctcgtgttttggcctactcacgaaaatggtcatgccattttaaaaca 43281268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 46193948 - 46193883
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  46193948 cttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcctgcccttttaaaaca 46193883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 181 - 254
Target Start/End: Complemental strand, 51021344 - 51021271
Alignment:
Q  181 aataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacaca 254  Q
    |||| ||||||||||| ||||| |||| ||||||| |||||||||||||| ||||| |||| ||||||||||||    
T  51021344 aataggcttaattacacttttgatcctcgtgttttggcctactcacgaaattggtcctgcccttttaaaacaca 51021271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 16690939 - 16691003
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||||||||||||||||||||   |||||||||||||||||| ||||  |||||||||    
T  16690939 ttaattacatttttggtccttgtgttttgatctactcacgaaaatggtcctgcctctttaaaaca 16691003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 12234873 - 12234807
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| | |||||||||| ||||||| |||||||||||||| || ||||||| ||||||||||    
T  12234873 gcttaattatacttttggtcctcgtgttttggcctactcacgaaactgatcatgcccttttaaaaca 12234807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 20471055 - 20470989
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||||| |||||| ||||||| || ||||||||||    
T  20471055 gcttaattacacttttggtcctcgtgttttggcctacttacgaaactggtcattcccttttaaaaca 20470989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 20958403 - 20958337
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||| ||||| || |||| |||||||||||||||||||| |||| ||||||||||    
T  20958403 gcttaattacacttttagtcctcgtattttggcctactcacgaaaatggtcctgcccttttaaaaca 20958337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 22434180 - 22434246
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| || ||||||||||| ||||| |||| ||||||||||    
T  22434180 gcttaattacacttttggtcctcgtgttttggcatactcacgaaactggtcctgcccttttaaaaca 22434246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 25447248 - 25447314
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||||||| |||| ||||| |||| ||||||||||    
T  25447248 gcttaattacacttttggtcctcgtgttttggcctactcatgaaactggtcctgcccttttaaaaca 25447314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 25447780 - 25447714
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||| | ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  25447780 gcttaattacacttttggtcttcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 25447714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 54995609 - 54995547
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| || ||||||| ||||||||    
T  54995609 ttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcatgcccttttaaaa 54995547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 33109686 - 33109751
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||||||||||||| ||||||| || ||||||||||| ||||| |||  ||||||||||    
T  33109686 cttaattacatttttggtcctcgtgttttggcatactcacgaaactggtcctgctcttttaaaaca 33109751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 138
Target Start/End: Complemental strand, 44161846 - 44161757
Alignment:
Q  49 atatttaacatgaaaaactctataatactaagagaaaaaccacatgacaaactccaaaaaatatttcattatattaaaaaatattacaat 138  Q
    ||||||||| || ||||| || ||||||  || ||||||||||  |||||||||| ||||||||| || ||||||||| |||||||||||    
T  44161846 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaat 44161757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 266
Target Start/End: Complemental strand, 48713902 - 48713812
Alignment:
Q  174 aatattgaataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    |||||| |||| | ||||||||| ||||  | || ||||||||||||||||| ||||||||||||||  |||||||  |||||||||||||||    
T  48713902 aatattcaataggtttaattacacttttaattctcgtgttttagcctactcatgaaaatggtcatgctcttttaaa--acagaacaaaattgt 48713812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 180 - 252
Target Start/End: Complemental strand, 33110014 - 33109942
Alignment:
Q  180 gaataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||| ||||||||||| ||||||||||  |||||| |||| ||||||||| ||||| |||| ||||||||||    
T  33110014 gaataggcttaattacacttttggtcctcatgttttggcctgctcacgaaattggtcctgcccttttaaaaca 33109942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 192 - 266
Target Start/End: Original strand, 20957196 - 20957268
Alignment:
Q  192 ttacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    |||||||||||||||| | ||||| || ||||||||||||||||||| |  |||||||||||  |||||||||||    
T  20957196 ttacatttttggtcctcgagttttggcttactcacgaaaatggtcatactcttttaaaacac--aacaaaattgt 20957268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 43242372 - 43242475
Alignment:
Q  269 catttttcatcctaccatccattttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacatgtc 368  Q
    |||||||| |||||||  | |||||||| || ||||||||||| ||||||||  || |||||||||  | |||||||  ||||||| ||||| |||||||    
T  43242372 catttttcgtcctacctccaattttatcatccaaaaacgctgatatggcaaagaaatacctatgtgatagtgccaaatgggaaaatgacattaacatgtc 43242471  T
Q  369 atta 372  Q
    ||||    
T  43242472 atta 43242475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 318
Target Start/End: Complemental strand, 44892597 - 44892542
Alignment:
Q  263 ttgttacatttttcatcctaccatccattttatcctcaaaaaacgctgagatggca 318  Q
    ||||| |||||||| ||||||| |||||||||||||| ||||||||||| ||||||    
T  44892597 ttgttgcatttttcgtcctaccctccattttatcctccaaaaacgctgatatggca 44892542  T

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Target: chr4; HSP #42
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 334
Target Start/End: Original strand, 48708391 - 48708462
Alignment:
Q  263 ttgttacatttttcatcctaccatccattttatcctcaaaaaacgctgagatggcaaatgaacacctatgtg 334  Q
    ||||| ||||| | |||||||||  |||||||||||| ||| ||  ||||||||||||||||||||||||||    
T  48708391 ttgttgcatttataatcctaccactcattttatcctccaaatacattgagatggcaaatgaacacctatgtg 48708462  T

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Target: chr4; HSP #43
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 10258431 - 10258365
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||| | ||||||||| |||| ||||| |||| ||||||||||    
T  10258431 gcttaattacacttttggtcctcgtgttgtggcctactcaggaaattggtcctgcccttttaaaaca 10258365  T

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Target: chr4; HSP #44
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 15523778 - 15523712
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||| | ||||||| | |||||||||||| ||||| |||| ||||||||||    
T  15523778 gcttaattacacttttggtcatcgtgttttgggctactcacgaaactggtcctgcccttttaaaaca 15523712  T

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Target: chr4; HSP #45
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 16318320 - 16318254
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||| ||| || || |||| ||||||||||    
T  16318320 gcttaattacacttttggtcctcgtgttttggcctactcacaaaactgatcctgcccttttaaaaca 16318254  T

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Target: chr4; HSP #46
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 38962362 - 38962297
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||||||||||||| ||||||| | ||| |||||||| |||||  ||| ||||||||||    
T  38962362 cttaattacatttttggtcctcgtgttttggtctattcacgaaactggtccggcccttttaaaaca 38962297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 48295087 - 48295009
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    |||||||||||||||||||| | |||||||   |||||||||||| ||||| ||||  ||||||||||  |||||||||||    
T  48295087 gcttaattacatttttggtcatcgtgttttgatctactcacgaaattggtcttgcctctttaaaacac--aacaaaattgt 48295009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 4220101 - 4220037
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| || || |||  ||||||||||    
T  4220101 ttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcctgctcttttaaaaca 4220037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 48526723 - 48526659
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||| | |||||||||| ||||||| | |||||||||||| ||||| |||| ||||||||||    
T  48526723 ttaattatacttttggtcctcgtgttttggtctactcacgaaactggtcttgcccttttaaaaca 48526659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 16691615 - 16691560
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgcc 241  Q
    ||||||||||| ||||| ||| ||||||||  ||||||||||||||||||| ||||    
T  16691615 gcttaattacacttttgatccctgtgttttgacctactcacgaaaatggtcctgcc 16691560  T

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Target: chr4; HSP #51
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 145
Target Start/End: Original strand, 48826849 - 48826896
Alignment:
Q  98 aactccaaaaaatatttcattatattaaaaaatattacaatattctct 145  Q
    |||||| ||||||||| || ||||||||| ||||||||||||||||||    
T  48826849 aactccgaaaaatattccactatattaaagaatattacaatattctct 48826896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 12234330 - 12234396
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||||||||  |||||| || || |||||||| ||||| |||| ||||||||||    
T  12234330 gcttaattacacttttggtcctcttgttttggcttattcacgaaactggtcctgcccttttaaaaca 12234396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Complemental strand, 10258272 - 10258227
Alignment:
Q  327 cctatgtggcattgccaaactggaaaataacatttacatgtcatta 372  Q
    ||||||||||||||||||  ||||||||  ||||||||||||||||    
T  10258272 cctatgtggcattgccaatttggaaaatgtcatttacatgtcatta 10258227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 35363145 - 35363096
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggt 235  Q
    ||||||||||| ||||| |||| ||||||| |||||||||||||| ||||    
T  35363145 gcttaattacacttttgatcctcgtgttttggcctactcacgaaactggt 35363096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #55
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 40160633 - 40160580
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgcc 241  Q
    ||||||||||||||||||||||  ||||  || |||||||||||| ||||||||    
T  40160633 ttaattacatttttggtccttgcattttgaccaactcacgaaaatagtcatgcc 40160580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #56
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 43281240 - 43281192
Alignment:
Q  263 ttgttacatttttcatcctaccatccattttatcctcaaaaaacgctga 311  Q
    ||||| |||||||| |||||||  ||||||||||||||||||| |||||    
T  43281240 ttgttgcatttttcgtcctaccccccattttatcctcaaaaaatgctga 43281192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #57
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Original strand, 48293595 - 48293639
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaa 230  Q
    ||||||||||| |||||||||| ||||||| || |||||||||||    
T  48293595 gcttaattacacttttggtcctcgtgttttggcttactcacgaaa 48293639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #58
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 48293690 - 48293738
Alignment:
Q  263 ttgttacatttttcatcctaccatccattttatcctcaaaaaacgctga 311  Q
    ||||| ||||||||||||| || |||||||||| ||| |||||||||||    
T  48293690 ttgttgcatttttcatcctgccctccattttattctccaaaaacgctga 48293738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #59
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 54995072 - 54995136
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||| |||| || |||||||||||||| | ||| | || ||||||||||    
T  54995072 ttaattacacttttggtcctcgtgtattggcctactcacgaaactagtcctacccttttaaaaca 54995136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 51; Significance: 4e-20; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 2319673 - 2319739
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||| ||||||||||    
T  2319673 gcttaattacatttttggtcctcgtgttttggcctactcacgaaactggtcatgcccttttaaaaca 2319739  T

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Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 23075672 - 23075606
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| |||||||||| ||||||||||    
T  23075672 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgcccttttaaaaca 23075606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 31470860 - 31470794
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||||||||||||||||||||||||||||||| ||||  |||| ||||||||||    
T  31470860 gcttaattacacttttggtccttgtgttttagcctactcacgaaactggttctgcccttttaaaaca 31470794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 1149976 - 1149912
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||||| |||||||||| ||||||||||||||||| |||| |||||||||| ||||||||    
T  1149976 gcttaattacacttttggtcctcgtgttttagcctactcatgaaactggtcatgcccttttaaaa 1149912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 29035180 - 29035103
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    |||||||||| |||| ||||| |||||||||||||||||||||| |||| ||||| |||||||  |||||||||||||||    
T  29035180 cttaattacacttttcgtcctcgtgttttagcctactcacgaaattggttatgcccttttaaa--acagaacaaaattgt 29035103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 10900474 - 10900408
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| || |||| |||||||||||||| |||||||||| ||||||||||    
T  10900474 gcttaattacacttttggtcctcgtattttggcctactcacgaaactggtcatgcccttttaaaaca 10900408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 11445531 - 11445465
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  11445531 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcctttttaaaaca 11445465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 12935158 - 12935224
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  12935158 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 12935224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 15828185 - 15828119
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||||| || ||||||||||    
T  15828185 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatacccttttaaaaca 15828119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 20741101 - 20741167
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  20741101 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 20741167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 22219897 - 22219831
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  22219897 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 22219831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 28472638 - 28472704
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||| |||||||||| ||||| |||||||||||||||    
T  28472638 gcttaattacacttttggtcctcgtgttttggccaactcacgaaagtggtcctgccattttaaaaca 28472704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 29859827 - 29859893
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||| |||||||||| ||||| |||||||||||||||    
T  29859827 gcttaattacacttttggtcctcgtgttttggccaactcacgaaagtggtcctgccattttaaaaca 29859893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 18504922 - 18504986
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  18504922 ttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcctttttaaaaca 18504986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 23074000 - 23074064
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||    
T  23074000 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaa 23074064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 188 - 266
Target Start/End: Complemental strand, 3835268 - 3835192
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    ||||||||| ||||||||| ||||||||  ||||||||||||||||||| ||||  ||||||  |||||||||||||||    
T  3835268 ttaattacacttttggtccatgtgttttgacctactcacgaaaatggtcctgcctctttaaa--acagaacaaaattgt 3835192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 1149466 - 1149532
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||| |||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  1149466 gcttaattacacttttgatcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 1149532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 11277126 - 11277060
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| || ||||||||||| ||||| |||| ||||||||||    
T  11277126 gcttaattacacttttggtcctcgtgttttggcttactcacgaaactggtcctgcccttttaaaaca 11277060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 18257138 - 18257204
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| || ||||||||||| ||||| |||| ||||||||||    
T  18257138 gcttaattacacttttggtcctcgtgttttggcatactcacgaaactggtcctgcccttttaaaaca 18257204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 31470316 - 31470382
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||| |||| ||||||| |||||||||||||| |||||||||  ||||||||||    
T  31470316 gcttaattacacttttgatcctcgtgttttggcctactcacgaaactggtcatgctcttttaaaaca 31470382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 10899942 - 10900006
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||| | ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  10899942 ttaattacacttttggtcatcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 10900006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 11444988 - 11445054
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||  ||||| ||||  |||||||||    
T  11444988 gcttaattacacttttggtcctcgtgttttggcctactcacgaagctggtcctgcccctttaaaaca 11445054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 12935701 - 12935635
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| || ||||||||||| ||||| |||| || |||||||    
T  12935701 gcttaattacacttttggtcctcgtgttttggcgtactcacgaaactggtcctgcctttataaaaca 12935635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 18257681 - 18257615
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| | |||||||||| |||||||  ||||||||||||| ||||| |||| ||||||||||    
T  18257681 gcttaattatacttttggtcctcgtgttttgacctactcacgaaactggtcctgcccttttaaaaca 18257615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 20741648 - 20741582
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| | |||||||| ||||||| |||||||||||||| || || |||| ||||||||||    
T  20741648 gcttaattacactcttggtcctcgtgttttggcctactcacgaaactgatcctgcccttttaaaaca 20741582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 372
Target Start/End: Complemental strand, 29035086 - 29034978
Alignment:
Q  263 ttgttacatttttcatcctaccatccattttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacattta 362  Q
    ||||| |||||||| ||| ||| |||||||| ||||| ||||||||  ||||||||||||||   |||||||||||| |||  |||||||||   |||||    
T  29035086 ttgttgcatttttcgtcccaccctccattttttcctccaaaaacgcacagatggcaaatgaa-ggctatgtggcattaccactctggaaaatgctattta 29034988  T
Q  363 catgtcatta 372  Q
     |||||||||    
T  29034987 aatgtcatta 29034978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 4811373 - 4811437
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||||| |||||||||  || |||| | |||||||||||| |||||||||| ||||||||    
T  4811373 gcttaattacacttttggtcccagtattttggtctactcacgaaactggtcatgcccttttaaaa 4811437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 18505465 - 18505397
Alignment:
Q  184 aagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| | |||||||||| ||||||| | |||||||||||| || || |||| ||||||||||    
T  18505465 aagcttaattatacttttggtcctcgtgttttggtctactcacgaaactgatcctgcccttttaaaaca 18505397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 2322766 - 2322696
Alignment:
Q  182 ataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||| ||||||||| |||||||| | ||||||| | |||||||||||| | ||| |||| ||||||||||    
T  2322766 ataagtttaattacacttttggtcttcgtgttttggtctactcacgaaactagtcttgcctttttaaaaca 2322696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 15827639 - 15827705
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| || ||||||||||| ||||  || | ||||||||||    
T  15827639 gcttaattacacttttggtcctcgtgttttggcttactcacgaaactggttctgtccttttaaaaca 15827705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 43)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 1978109 - 1978175
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||    
T  1978109 gcttaattacatttttggtccttgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 1978175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 252
Target Start/End: Complemental strand, 35781211 - 35781141
Alignment:
Q  182 ataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||||||| ||||| |||| ||||||| ||||||||||||||||||||||||| ||||||||||    
T  35781211 ataagcttaattacacttttgatcctcgtgttttggcctactcacgaaaatggtcatgcccttttaaaaca 35781141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 252
Target Start/End: Complemental strand, 11091075 - 11090998
Alignment:
Q  175 atattgaataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||| |||| ||||||||||| |||||||||| ||||||| |||||||||||||| |||||||||| ||||||||||    
T  11091075 atattaaataggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgcccttttaaaaca 11090998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 14432684 - 14432619
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||||||||||||| ||||||| ||||||||| |||| |||||||||||||||||||||    
T  14432684 cttaattacatttttggtcctcgtgttttggcctactcatgaaactggtcatgccattttaaaaca 14432619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 22374316 - 22374387
Alignment:
Q  181 aataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||| ||||||||||| |||||||||| ||||||| |||||||||||||| |||||||||| ||||||||||    
T  22374316 aataggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgcccttttaaaaca 22374387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 1978653 - 1978587
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||    
T  1978653 gcttaattacacttttggtccttgtgttttggcctactcacgaaattggtcctgcccttttaaaaca 1978587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 35779709 - 35779787
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    ||||||||||| |||||||||| |||||||  | ||||||||||||||||| ||||||||||||  |||||||||||||||    
T  35779709 gcttaattacacttttggtcctcgtgttttgacatactcacgaaaatggtcctgccattttaaa--acagaacaaaattgt 35779787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 263 - 372
Target Start/End: Original strand, 35779804 - 35779913
Alignment:
Q  263 ttgttacatttttcatcctaccatccattttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacattta 362  Q
    ||||| |||||||  |||||||  ||||||||||||| ||||||||||| ||||||||  || |||||||||||| ||||||  || ||||| ||||| |    
T  35779804 ttgttgcattttttgtcctaccccccattttatcctccaaaaacgctgatatggcaaagaaatacctatgtggcagtgccaacttgaaaaatgacattaa 35779903  T
Q  363 catgtcatta 372  Q
    ||||||||||    
T  35779904 catgtcatta 35779913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 22374869 - 22374803
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  22374869 gcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcttgcccttttaaaaca 22374803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 28616614 - 28616680
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  28616614 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcttgcccttttaaaaca 28616680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 40027141 - 40027207
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||| | ||||||| |||||||||||||| |||||||||| ||||||||||    
T  40027141 gcttaattacacttttggtcatcgtgttttggcctactcacgaaactggtcatgcccttttaaaaca 40027207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 15551501 - 15551566
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||| |||||||||| ||||||| |  |||||||||||||||||||||| ||||||||||    
T  15551501 cttaattacacttttggtcctcgtgttttggtttactcacgaaaatggtcatgcctttttaaaaca 15551566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 291 - 372
Target Start/End: Complemental strand, 20440453 - 20440372
Alignment:
Q  291 tttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacatgtcatta 372  Q
    ||||||||| ||||||||||| ||||||||  || |||||||||||| ||||||  |||||||| ||||| |||||||||||    
T  20440453 tttatcctccaaaaacgctgatatggcaaagaaatacctatgtggcagtgccaacttggaaaatgacattaacatgtcatta 20440372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 40815347 - 40815412
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  40815347 cttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcttgcccttttaaaaca 40815412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 184 - 252
Target Start/End: Complemental strand, 239898 - 239830
Alignment:
Q  184 aagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||| ||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  239898 aagcttagttacacttttggtcctcgtgttttggcctactcacgaaattggtcctgcccttttaaaaca 239830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 8425358 - 8425422
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||||||||||| |||||||||||||| ||||| | || ||||||||||    
T  8425358 ttaattacacttttggtccttgtgttttggcctactcacgaaattggtcttacctttttaaaaca 8425422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 187 - 266
Target Start/End: Original strand, 8972239 - 8972316
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    |||||||||| |||||||||| ||||||| || | |||||||||||||||||||| ||| |||  |||||||||||||||    
T  8972239 cttaattacacttttggtcctcgtgttttggcatgctcacgaaaatggtcatgccctttcaaa--acagaacaaaattgt 8972316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 40027682 - 40027618
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  40027682 ttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcctgcccttttaaaaca 40027618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 40815887 - 40815823
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| |||| ||||| ||||||||||    
T  40815887 ttaattacacttttggtcctcgtgttttggcctactcacgaaactggtaatgcccttttaaaaca 40815823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 174 - 252
Target Start/End: Original strand, 11090510 - 11090588
Alignment:
Q  174 aatattgaataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||| |||| | ||||||||| |||||||||| ||||||| |||||||||||||| | ||| |||| ||||||||||    
T  11090510 aatatttaataggtttaattacacttttggtcctcgtgttttggcctactcacgaaacttgtcctgcccttttaaaaca 11090588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 18450831 - 18450897
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| |||||  ||| ||||||||||    
T  18450831 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtccagcccttttaaaaca 18450897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 18451375 - 18451309
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||||| |||||| ||||| |||| ||||||||||    
T  18451375 gcttaattacacttttggtcctcgtgttttggcctacttacgaaactggtcctgcccttttaaaaca 18451309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 20440575 - 20440509
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||| |||||||||| ||||| |||| ||||||||||    
T  20440575 gcttaattacacttttggtcctcgtgttttggccaactcacgaaactggtcctgcccttttaaaaca 20440509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 20444750 - 20444816
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||| |||||||||| ||||| |||| ||||||||||    
T  20444750 gcttaattacacttttggtcctcgtgttttggccaactcacgaaactggtcctgcccttttaaaaca 20444816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 26538623 - 26538557
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| | ||||||||    
T  26538623 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgccctcttaaaaca 26538557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 28847239 - 28847173
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||||||||||||||| ||||||| | |||||||||||| ||||| |||  ||||||||||    
T  28847239 gcttaattacatttttggtcctcgtgttttggtctactcacgaaactggtcctgctcttttaaaaca 28847173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 191 - 252
Target Start/End: Original strand, 3025472 - 3025533
Alignment:
Q  191 attacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||| |||  ||||||||||    
T  3025472 attacatttttggtcctcgtgttttggcctactcacgaaactggtcctgctcttttaaaaca 3025533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 239354 - 239419
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||| | ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  239354 gcttaattacacttttggtcatcgtgttttggcctactcacgaaactggtcctgcc-ttttaaaaca 239419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 7446890 - 7446824
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||||||||| |||| |||||||  | ||||||||||| ||||| |||| ||||||||||    
T  7446890 gcttaattacatttttgatcctcgtgttttgccttactcacgaaactggtcctgcccttttaaaaca 7446824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 8425902 - 8425840
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||| ||||||| |||||||||| | |||||||||||| ||||| |||| ||||||||    
T  8425902 ttaattacacttttggttcttgtgttttggtctactcacgaaattggtcctgcccttttaaaa 8425840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 26538098 - 26538164
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| || ||||||||||| ||||  |||| ||||||||||    
T  26538098 gcttaattacacttttggtcctcgtgttttggcttactcacgaaactggttctgcccttttaaaaca 26538164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 28617158 - 28617092
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||  || | ||||||||||    
T  28617158 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggttctgtccttttaaaaca 28617092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 43058876 - 43058810
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||| |||| ||||||| |||||||||||||| ||||| |||  ||||||||||    
T  43058876 gcttaattacacttttgatcctcgtgttttggcctactcacgaaactggtcctgctcttttaaaaca 43058810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 3824134 - 3824050
Alignment:
Q  287 ccattttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacatgtcatta 372  Q
    ||||||||||||| |||||||   |||||||||||||   ||||||||||| || ||| ||||||||| | |||||||||||||||    
T  3824134 ccattttatcctccaaaaacgtacagatggcaaatgagtgcctatgtggcagtg-caatctggaaaatgaaatttacatgtcatta 3824050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 288 - 367
Target Start/End: Original strand, 5035984 - 5036063
Alignment:
Q  288 cattttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacatgt 367  Q
    ||||||| |||| ||||||||| | |||||||| |||||||||||| ||| ||||||  || ||||| ||||| ||||||    
T  5035984 cattttaccctccaaaaacgcttatatggcaaaggaacacctatgttgcagtgccaacttgaaaaatgacattaacatgt 5036063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 3026005 - 3025940
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||||||| |||||| ||||||| || ||||||||||| ||||  |||| ||||||||||    
T  3026005 gcttaattacatttt-ggtcctcgtgttttggcttactcacgaaattggttctgcccttttaaaaca 3025940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 7446343 - 7446409
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||| |||| ||||||| | ||||||| |||| ||||| |||| ||||||||||    
T  7446343 gcttaattacacttttgatcctcgtgttttggtctactcatgaaattggtcctgcccttttaaaaca 7446409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 43058334 - 43058400
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||| |||| ||||||| ||| |||||| ||| ||||| |||| ||||||||||    
T  43058334 gcttaattacacttttgatcctcgtgttttggccaactcactaaactggtcctgcctttttaaaaca 43058400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 8539447 - 8539350
Alignment:
Q  49 atatttaacatgaaaaactctataatactaagagaaaaaccacatgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 146  Q
    ||||||||| || ||||| || ||||||  || |||||| |||  |||||||||| ||| ||||| || |||||| || |||||||||||||| ||||    
T  8539447 atatttaacgtggaaaaccctctaataccgagggaaaaatcacgggacaaactccgaaagatattccactatatttaagaatattacaatattatctc 8539350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Complemental strand, 63507 - 63459
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtc 236  Q
    ||||||| ||||||||||||||| ||||  || ||||||||||||||||    
T  63507 ttaattatatttttggtccttgtattttgaccaactcacgaaaatggtc 63459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 312 - 372
Target Start/End: Original strand, 2189275 - 2189335
Alignment:
Q  312 gatggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacatgtcatta 372  Q
    |||||||||||||| |||||| |||||||||||   | |||||| ||||||||||| ||||    
T  2189275 gatggcaaatgaacgcctatgcggcattgccaataagaaaaatatcatttacatgttatta 2189335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 4355756 - 4355808
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcat 238  Q
    ||||||||||| ||||||||||||  ||||  ||||||||||||| |||||||    
T  4355756 gcttaattacacttttggtccttgcattttgacctactcacgaaattggtcat 4355808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 187 - 266
Target Start/End: Complemental strand, 15552596 - 15552520
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    |||||||||| |||||||| |  |||||| ||||||||||||||||| ||  ||| |||||||  |||||||||||||||    
T  15552596 cttaattacacttttggtcataatgttttggcctactcacgaaaatgatc-cgcccttttaaa--acagaacaaaattgt 15552520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 4222270 - 4222188
Alignment:
Q  182 ataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    ||||||||||||||| |||||||||| ||||||| | || |||||||||||||||||||| |||||||  |||||||||||||||    
T  4222270 ataagcttaattacacttttggtcctcgtgttttgggcttctcacgaaaatggtcatgcccttttaaa--acagaacaaaattgt 4222188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 2864756 - 2864821
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||| |||||||||||||||||| |||||||||||||| || ||||||| ||||||||||    
T  2864756 cttaattacacttttggtccttgtgttttggcctactcacgaaattgatcatgcccttttaaaaca 2864821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 29106978 - 29107075
Alignment:
Q  49 atatttaacatgaaaaactctataatactaagagaaaaaccacatgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 146  Q
    ||||||||| || ||||| || ||||||  || ||||||||||  |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  29106978 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 29107075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 2865304 - 2865233
Alignment:
Q  181 aataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||| ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  2865304 aataggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 2865233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 5819473 - 5819407
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  5819473 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 5819407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 7348560 - 7348626
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||||||||||||||  |||||||| |||||||||||| ||||| |||| ||||||||||    
T  7348560 gcttaattacatttttggtcctcatgttttagtctactcacgaaattggtcgtgcccttttaaaaca 7348626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 8647439 - 8647505
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  8647439 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgccgttttaaaaca 8647505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 15708972 - 15709038
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| |||| ||||| ||||||||||    
T  15708972 gcttaattacacttttggtcctagtgttttggcctactcacgaaactggttatgcccttttaaaaca 15709038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 18183513 - 18183447
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  18183513 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 18183447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 19359680 - 19359614
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  19359680 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 19359614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 29454741 - 29454807
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||| || |||||||| ||||||||| |||||||||||||| |||||||||| ||||||||||    
T  29454741 gcttaatttcacttttggtcattgtgttttggcctactcacgaaattggtcatgcccttttaaaaca 29454807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 5818932 - 5818996
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  5818932 ttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 5818996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 15372415 - 15372351
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  15372415 ttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 15372351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 18182973 - 18183037
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||| | ||||||| |||||||||||||| |||||||||| ||||||||||    
T  18182973 ttaattacacttttggtcatcgtgttttggcctactcacgaaactggtcatgcccttttaaaaca 18183037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 8647982 - 8647916
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| || || |||| ||||||||||    
T  8647982 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcctgcccttttaaaaca 8647916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 24362380 - 24362314
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| || |||| |||||||||||||| ||||| |||| ||||||||||    
T  24362380 gcttaattacacttttggtcctcgtattttggcctactcacgaaactggtcctgcccttttaaaaca 24362314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 42911093 - 42911189
Alignment:
Q  49 atatttaacatgaaaaactctataatactaagagaaaaaccacatgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 146  Q
    |||||||||||| ||||| || ||||||  || ||||||||||  |||||||||| |||| |||| || |||||| || |||||||||||||||||||    
T  42911093 atatttaacatggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaa-tattccactatatttaagaatattacaatattctctc 42911189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 19359137 - 19359201
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||||| ||||||||||  |||||| |||||||||||||| ||||| |||| ||||||||    
T  19359137 gcttaattacacttttggtcctcttgttttggcctactcacgaaactggtcctgcccttttaaaa 19359201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 264
Target Start/End: Original strand, 6018315 - 6018391
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaatt 264  Q
    ||||||||||||||||||| || |||||||   |||||||||||| |||||||| | |||||||  |||||||||||||    
T  6018315 gcttaattacatttttggttctcgtgttttgttctactcacgaaactggtcatgtccttttaaa--acagaacaaaatt 6018391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 164192 - 164258
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| |||||||  ||||||||||||| ||||| |||| ||||| ||||    
T  164192 gcttaattacacttttggtcctcgtgttttgacctactcacgaaactggtcctgcccttttataaca 164258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 7349561 - 7349495
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| | |||||||||||| ||||| |||  ||||||||||    
T  7349561 gcttaattacacttttggtcctcgtgttttggtctactcacgaaattggtcctgctcttttaaaaca 7349495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 8461475 - 8461409
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| || || |||  ||||||||||    
T  8461475 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactgttcctgctcttttaaaaca 8461409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 14215787 - 14215721
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| |||||||  ||||||||||||| || || |||| ||||||||||    
T  14215787 gcttaattacaattttggtcctcgtgttttgacctactcacgaaactgatcctgcccttttaaaaca 14215721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 24331560 - 24331626
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| |||||||   |||||||||||| ||||| |||| ||||||||||    
T  24331560 gcttaattacacttttggtcctcgtgttttgatctactcacgaaactggtcctgcccttttaaaaca 24331626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 29455286 - 29455220
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||||  ||||||||| ||||||| | |||||||||||| ||||| |||| ||||||||||    
T  29455286 gcttaattacacctttggtcctcgtgttttggtctactcacgaaactggtcctgcccttttaaaaca 29455220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 14215243 - 14215308
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||| |||||||||| ||||||| || ||||||||||| |||| || || ||||||||||    
T  14215243 cttaattacacttttggtcctcgtgttttggcttactcacgaaactggttatacccttttaaaaca 14215308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 16018590 - 16018654
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||||| |||||||| | ||||||| ||||| |||||||| || ||||||| ||||||||    
T  16018590 gcttaattacacttttggtcttcgtgttttggcctattcacgaaattgatcatgcccttttaaaa 16018654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 15709512 - 15709457
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgcc 241  Q
    ||||||||||| |||||||| ||||||||| ||||||||| |||| | ||||||||    
T  15709512 gcttaattacacttttggtcattgtgttttggcctactcatgaaactagtcatgcc 15709457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 4219664 - 4219730
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||| |||| ||||||| | ||| | || |||||||||||||| ||||||||||    
T  4219664 gcttaattacacttttgatcctcgtgttttgggctatttacaaaaatggtcatgcctttttaaaaca 4219730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 8460931 - 8460997
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||| || |||||||| | || |||| |||||||||||||| ||||| |||| ||||||||||    
T  8460931 gcttaattccacttttggtcatcgtattttggcctactcacgaaactggtcctgcccttttaaaaca 8460997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 25000633 - 25000567
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||| |  |||||| |||||||||||||| ||||||||   ||||||||||    
T  25000633 gcttaattacacttttggtcttcatgttttggcctactcacgaaattggtcatgttcttttaaaaca 25000567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 4623149 - 4623227
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    ||||||||||| |||||||| | |||||||  | ||||||||||| ||||| ||||  ||||||  |||||||||||||||    
T  4623149 gcttaattacacttttggtcatcgtgttttgacttactcacgaaattggtcctgcctctttaaa--acagaacaaaattgt 4623227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 327 - 372
Target Start/End: Original strand, 6018473 - 6018518
Alignment:
Q  327 cctatgtggcattgccaaactggaaaataacatttacatgtcatta 372  Q
    ||||||||||||||||||  ||||||||  ||||||||||||||||    
T  6018473 cctatgtggcattgccaatttggaaaatgtcatttacatgtcatta 6018518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 230
Target Start/End: Complemental strand, 14464064 - 14464020
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaa 230  Q
    ||||||||||| |||| ||||| ||||||| ||||||||||||||    
T  14464064 gcttaattacacttttagtcctcgtgttttggcctactcacgaaa 14464020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0295 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0295
Description:

Target: scaffold0295; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 4794 - 4860
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| |||||||||| ||||||||||    
T  4794 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgcccttttaaaaca 4860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 24301100 - 24301034
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||    
T  24301100 gcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcctgccattttaaaaca 24301034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 185 - 266
Target Start/End: Complemental strand, 32697245 - 32697166
Alignment:
Q  185 agcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    |||||||||| |||||||||||| |||||||||||||||||||||| | |||| ||| |||||||  |||||||||||||||    
T  32697245 agcttaattatatttttggtcctcgtgttttagcctactcacgaaattagtcacgcccttttaaa--acagaacaaaattgt 32697166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 39555579 - 39555645
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||||||||||||||    
T  39555579 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgccattttaaaaca 39555645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 290 - 372
Target Start/End: Complemental strand, 51474755 - 51474673
Alignment:
Q  290 ttttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacatgtcatta 372  Q
    |||||||||| |||||||||||  |||| ||| ||||||||||||||| |||||| ||| ||||| |||||||||||||||||    
T  51474755 ttttatcctccaaaaacgctgatgtggccaataaacacctatgtggcagtgccaatctgaaaaatgacatttacatgtcatta 51474673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 25853235 - 25853299
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| |||||||||| ||||||||    
T  25853235 gcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcatgcccttttaaaa 25853299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 31779201 - 31779130
Alignment:
Q  181 aataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||| ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  31779201 aataggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 31779130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 4275908 - 4275842
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| |||||||||  ||||||||||    
T  4275908 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgctcttttaaaaca 4275842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Complemental strand, 23228551 - 23228474
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    ||||||||||| |||||||||  ||||||| ||||||||||||||||| ||||||| |||||||||   ||||||||||||    
T  23228551 gcttaattacacttttggtccccgtgttttggcctactcacgaaaatgatcatgcccttttaaaac---gaacaaaattgt 23228474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 23644463 - 23644529
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| || |||| |||||||||||||| ||||| |||||||||||||||    
T  23644463 gcttaattacacttttggtcctcgtattttggcctactcacgaaattggtcctgccattttaaaaca 23644529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 32535507 - 32535441
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  32535507 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 32535441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 39556121 - 39556055
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  39556121 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 39556055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 20840561 - 20840625
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||    
T  20840561 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcctttttaaaa 20840625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 26837363 - 26837427
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||||||||||||||| |||| |||||||||||||| ||||| |||| ||||| ||||    
T  26837363 ttaattacatttttggtccttgtattttggcctactcacgaaattggtcctgcccttttataaca 26837427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 17464492 - 17464558
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||| || ||||| |||||||||| ||||||||||    
T  17464492 gcttaattacacttttggtcctcgtgttttggcctattcgcgaaactggtcatgcccttttaaaaca 17464558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 20841105 - 20841039
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||||| || ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  20841105 gcttaattacacttttggtgctcgtgttttggcctactcacgaaactggtcctgcctttttaaaaca 20841039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 27393662 - 27393728
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| |||||||  ||||||||| ||| ||||| |||||||||||||||    
T  27393662 gcttaattacacttttggtcctcgtgttttgacctactcacaaaactggtcctgccattttaaaaca 27393728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 27394121 - 27394055
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||||||||||||  |||| |||| ||||||||||    
T  27394121 gcttaattacacttttggtcctcgtgttttggcctactcacgaaataggtcctgcctttttaaaaca 27394055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 30104483 - 30104549
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| |||||||  ||||||||||||| ||||| |||| ||||||||||    
T  30104483 gcttaattacacttttggtcctcgtgttttgacctactcacgaaattggtcctgcccttttaaaaca 30104549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 37222115 - 37222049
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| |||||||  ||||||||| ||| ||||| |||||||||||||||    
T  37222115 gcttaattacacttttggtcctcgtgttttgccctactcacaaaattggtcctgccattttaaaaca 37222049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 43973442 - 43973508
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| |||||||  |||||||||||||||| | ||||| ||||||||||    
T  43973442 gcttaattacacttttggtcctcgtgttttgtcctactcacgaaaatgattatgcccttttaaaaca 43973508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 43973984 - 43973918
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||  |||| ||||||||||    
T  43973984 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggttctgcccttttaaaaca 43973918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 48452990 - 48453056
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||| |||||| |||||||| | ||||||| |||||||||||||| ||||| |||||||||||||||    
T  48452990 gcttgattacacttttggtcatcgtgttttggcctactcacgaaactggtcctgccattttaaaaca 48453056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 51473429 - 51473507
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    ||||||||||| |||||||||| ||||||| | ||| |||||||| ||||| |||| |||||||  |||||||||||||||    
T  51473429 gcttaattacacttttggtcctcgtgttttggtctattcacgaaattggtcctgcccttttaaa--acagaacaaaattgt 51473507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 26274570 - 26274634
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||||||| ||||||| |||| | |||||||||||| ||||| |||| ||||||||||    
T  26274570 ttaattacatttttgatccttgtattttggactactcacgaaactggtcctgcccttttaaaaca 26274634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 32534962 - 32535026
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||| ||||||| || ||||||||||| ||||| |||| ||||||||||    
T  32534962 ttaattacacttttggtcctcgtgttttggcatactcacgaaattggtcctgcctttttaaaaca 32535026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 171 - 250
Target Start/End: Complemental strand, 5137540 - 5137461
Alignment:
Q  171 cacaatattgaataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||| | || ||||||||||| |||||||||| ||||||| ||||||||| |||| ||||  |||| ||||||||    
T  5137540 cacaatattaattaggcttaattacacttttggtcctcgtgttttggcctactcatgaaactggttctgcccttttaaaa 5137461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 23645009 - 23644943
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| | |||||||||| ||||||| |||||||||||||| ||||| | || ||||||||||    
T  23645009 gcttaattatacttttggtcctcgtgttttggcctactcacgaaattggtcctacccttttaaaaca 23644943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 25612519 - 25612457
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||| |||||||||| |||||||  ||||||||||||| ||||| |||| ||||||||    
T  25612519 ttaattacacttttggtcctcgtgttttgacctactcacgaaattggtcctgcccttttaaaa 25612457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 29801960 - 29801894
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||| |||| || |||| |||||||||||||| ||||| |||| ||||||||||    
T  29801960 gcttaattacacttttgatcctcgtattttggcctactcacgaaactggtcctgcccttttaaaaca 29801894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 30098307 - 30098241
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| |||||||  | ||||||||||| ||||| |||| ||||||||||    
T  30098307 gcttaattacacttttggtcctcgtgttttgacatactcacgaaactggtcttgcccttttaaaaca 30098241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 31778654 - 31778720
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| | ||||||| |||| ||||| |||| ||||||||||    
T  31778654 gcttaattacacttttggtcctcgtgttttggtctactcatgaaactggtcctgcccttttaaaaca 31778720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 37727474 - 37727408
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||||||||  |||||| |||||||||||||| ||||| |||  ||||||||||    
T  37727474 gcttaattacacttttggtcctcatgttttggcctactcacgaaactggtcctgctcttttaaaaca 37727408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 51474878 - 51474812
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||||| |  ||||||| || ||||||||||| |||||||||| ||||||||||    
T  51474878 gcttaattacacttttggttcccgtgttttggcatactcacgaaattggtcatgcccttttaaaaca 51474812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Complemental strand, 22425354 - 22425291
Alignment:
Q  189 taattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||| |||||||||| ||||||  |||||||||||||  |||||||||| || |||||||    
T  22425354 taattacacttttggtcctcgtgtttcggcctactcacgaatctggtcatgcccttgtaaaaca 22425291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 17465036 - 17464986
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtc 236  Q
    |||||||||||||||||||||| ||||||| |||||| || |||| |||||    
T  17465036 gcttaattacatttttggtcctcgtgttttggcctacgcatgaaactggtc 17464986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 29801357 - 29801423
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||| | ||||||| || ||||||| ||| ||||| |||| ||||||||||    
T  29801357 gcttaattacacttttggtcatcgtgttttggcatactcacaaaactggtcctgcccttttaaaaca 29801423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 25853770 - 25853705
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||| ||||| |||| |||||||   |||||||||||| ||||| || ||||||||||||    
T  25853770 cttaattacacttttgatcctcgtgttttgctctactcacgaaactggtcttgtcattttaaaaca 25853705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 235
Target Start/End: Complemental strand, 26837899 - 26837850
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggt 235  Q
    ||||||||||| |||||||||| ||||||| ||||||| |||||| ||||    
T  26837899 gcttaattacacttttggtcctcgtgttttggcctacttacgaaactggt 26837850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Complemental strand, 25612426 - 25612378
Alignment:
Q  263 ttgttacatttttcatcctaccatccattttatcctcaaaaaacgctga 311  Q
    ||||| |||||||| |||||||  ||||||||||||| |||||||||||    
T  25612426 ttgttgcatttttcgtcctaccccccattttatcctccaaaaacgctga 25612378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 26275108 - 26275044
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||| | |||||| |||||||||||  ||||||||||||| ||||| | || ||||||||||    
T  26275108 ttaattataattttggcccttgtgttttgacctactcacgaaactggtcctacccttttaaaaca 26275044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 263 - 311
Target Start/End: Original strand, 37220653 - 37220701
Alignment:
Q  263 ttgttacatttttcatcctaccatccattttatcctcaaaaaacgctga 311  Q
    ||||| || ||||| ||||||| |||||||||||||| |||||||||||    
T  37220653 ttgttgcacttttcgtcctaccctccattttatcctccaaaaacgctga 37220701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 246
Target Start/End: Complemental strand, 50116953 - 50116893
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccatttt 246  Q
    ||||||||||| ||||| |||| |||||||  | ||||||||||| |||||||||| ||||    
T  50116953 gcttaattacacttttgatcctcgtgttttgacttactcacgaaattggtcatgccctttt 50116893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 37)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 18984663 - 18984597
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||    
T  18984663 gcttaattacacttttggtccttgtgttttggcctactcacgaaattggtcctgcccttttaaaaca 18984597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 26859060 - 26859126
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||||||||||| ||||||| |||||| ||||| |||||||||||||||    
T  26859060 gcttaattacacttttggtccttgtgttttggcctactaacgaaactggtcctgccattttaaaaca 26859126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 34907401 - 34907304
Alignment:
Q  49 atatttaacatgaaaaactctataatactaagagaaaaaccacatgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 146  Q
    ||||||||| || ||||| || ||||||  || ||||||||||  |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  34907401 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 34907304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 5539812 - 5539883
Alignment:
Q  181 aataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||| ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  5539812 aatatgcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcctgcccttttaaaaca 5539883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 8678537 - 8678608
Alignment:
Q  181 aataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||| ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  8678537 aatatgcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 8678608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 187 - 250
Target Start/End: Original strand, 47826966 - 47827029
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    |||||||||| |||||||||| ||||||| | ||||||||||||||||||||||| ||||||||    
T  47826966 cttaattacacttttggtcctcgtgttttggtctactcacgaaaatggtcatgcccttttaaaa 47827029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 15646193 - 15646259
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| | |||||||||| ||||||| |||||||||||||| |||||||||| ||||||||||    
T  15646193 gcttaattatacttttggtcctcgtgttttggcctactcacgaaactggtcatgcccttttaaaaca 15646259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 29870163 - 29870097
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||||||| |||| ||||| |||||||||||||||    
T  29870163 gcttaattacacttttggtcctcgtgttttggcctactcatgaaactggtcctgccattttaaaaca 29870097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 17433758 - 17433693
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||| |||||||||| ||||| | |||||||||||||| |||||||||| ||||||||||    
T  17433758 cttaattacacttttggtcctcgtgttctggcctactcacgaaactggtcatgcccttttaaaaca 17433693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 33144462 - 33144397
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  33144462 cttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 33144397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 4636515 - 4636449
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| || || |||| ||||||||||    
T  4636515 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcctgcccttttaaaaca 4636449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 5540362 - 5540296
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| || | ||||||||||    
T  5540362 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgtccttttaaaaca 5540296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 5963120 - 5963058
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| || ||||||| ||||||||    
T  5963120 ttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcatgcccttttaaaa 5963058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 8679085 - 8679019
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||||||||| || ||||| |||| ||||||||||    
T  8679085 gcttaattacacttttggtcctcgtgttttggcctactcacggaactggtcctgcccttttaaaaca 8679019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 18984120 - 18984186
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| | |||||||||||| ||||| |||| ||||||||||    
T  18984120 gcttaattacacttttggtcctcgtgttttggtctactcacgaaactggtcctgcccttttaaaaca 18984186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 29306954 - 29307020
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||| |||| ||||||| |||||||||||||| |||||||| | ||||||||||    
T  29306954 gcttaattacacttttgatcctcgtgttttggcctactcacgaaactggtcatgtccttttaaaaca 29307020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 29869621 - 29869687
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| || ||||||||||| ||||| |||| ||||||||||    
T  29869621 gcttaattacacttttggtcctcgtgttttggcatactcacgaaactggtcttgcccttttaaaaca 29869687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 39154564 - 39154498
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||  ||||||||||    
T  39154564 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgctcttttaaaaca 39154498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 50970822 - 50970756
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||||| |||||| ||||| |||| ||||||||||    
T  50970822 gcttaattacacttttggtcctcgtgttttggcctacttacgaaactggtcctgcccttttaaaaca 50970756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 210 - 266
Target Start/End: Complemental strand, 47827108 - 47827054
Alignment:
Q  210 tgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    |||||| ||||||||||||||||||||||||| |||||||  |||||||||||||||    
T  47827108 tgttttggcctactcacgaaaatggtcatgcccttttaaa--acagaacaaaattgt 47827054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 180 - 249
Target Start/End: Original strand, 50970273 - 50970342
Alignment:
Q  180 gaataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaa 249  Q
    ||||| ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||  |||||||    
T  50970273 gaataggcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgctcttttaaa 50970342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 313 - 372
Target Start/End: Complemental strand, 12227695 - 12227636
Alignment:
Q  313 atggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacatgtcatta 372  Q
    ||||||||||||| ||||||||||| |||||| ||  ||||| |||||||||||||||||    
T  12227695 atggcaaatgaacgcctatgtggcagtgccaatctaaaaaatgacatttacatgtcatta 12227636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 15173642 - 15173572
Alignment:
Q  181 aataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||| ||||||||||| |||||||||| ||||||| |||||||||| ||| ||||| |||| ||||||||||    
T  15173642 aataggcttaattacacttttggtcctcgtgttttggcctactcacaaaactggtcctgcc-ttttaaaaca 15173572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 193 - 252
Target Start/End: Original strand, 33143925 - 33143984
Alignment:
Q  193 tacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  33143925 tacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 33143984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 2733501 - 2733435
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| | |||||||||||||||||| ||||| || ||||| ||||| |||| ||||||||||    
T  2733501 gcttaattatacttttggtccttgtgttttggcctattcgcgaaattggtcctgcccttttaaaaca 2733435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 9018974 - 9019040
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||||| |||||| ||||  |||| ||||||||||    
T  9018974 gcttaattacacttttggtcctcgtgttttggcctactaacgaaactggttctgcccttttaaaaca 9019040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 9019507 - 9019441
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| |||||||  ||||||||| ||| ||||  |||||||||||||||    
T  9019507 gcttaattacacttttggtcctcgtgttttgacctactcacaaaactggttctgccattttaaaaca 9019441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 250
Target Start/End: Original strand, 15173099 - 15173161
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| | ||| |||| ||||||||    
T  15173099 ttaattacacttttggtcctcgtgttttggcctactcacgaaactagtcctgcccttttaaaa 15173161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 15646739 - 15646673
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| || || | || ||||||||||    
T  15646739 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcctacccttttaaaaca 15646673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 21856587 - 21856521
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||||||| |||| || || |||| ||||||||||    
T  21856587 gcttaattacacttttggtcctcgtgttttggcctactcatgaaactgatcctgcctttttaaaaca 21856521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 29307486 - 29307420
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||| || |||||||||| |||||||  ||||||||||||| ||||| |||| ||||||||||    
T  29307486 gcttaattgcacttttggtcctcgtgttttgacctactcacgaaactggtcctgcccttttaaaaca 29307420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 52268291 - 52268357
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| || |||| |||| ||||||||| ||||| |||| ||||||||||    
T  52268291 gcttaattacacttttggtcctcgtattttggcctgctcacgaaattggtcctgcccttttaaaaca 52268357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 183 - 252
Target Start/End: Original strand, 5962576 - 5962645
Alignment:
Q  183 taagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||||||||||||||||| ||||| | | ||| |||||||| |||||  ||| ||||||||||    
T  5962576 taagcttaattacatttttggtcctcgtgttatggtctattcacgaaactggtccggcccttttaaaaca 5962645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 21856044 - 21856109
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||| |||||||||| |||||||   |||||||||||| ||||| |||| ||||||||||    
T  21856044 cttaattacacttttggtcctcgtgttttgatctactcacgaaactggtcctgcccttttaaaaca 21856109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 17433217 - 17433283
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||||||||  |||||| ||||||||| |||| ||  |||||| ||||||||||    
T  17433217 gcttaattacacttttggtcctcatgttttggcctactcatgaaactgaccatgcccttttaaaaca 17433283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 39154021 - 39154086
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||| |||||||| |  |||||| || ||||||||||| || ||||||| ||||||||||    
T  39154021 cttaattacacttttggtcatcatgttttggcatactcacgaaactgatcatgcccttttaaaaca 39154086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 288 - 372
Target Start/End: Complemental strand, 52269174 - 52269090
Alignment:
Q  288 cattttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacatgtcatta 372  Q
    |||||| ||||| ||||| ||  ||||||||||||||  ||||||||||||| |||  || ||||||   |||||||||||||||    
T  52269174 cattttttcctccaaaaatgcacagatggcaaatgaaggcctatgtggcattaccactctcgaaaatgctatttacatgtcatta 52269090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 4e-17; HSPs: 29)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 186 - 251
Target Start/End: Original strand, 11656456 - 11656521
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaac 251  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| |||||||||| |||||||||    
T  11656456 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgcccttttaaaac 11656521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 12930938 - 12930841
Alignment:
Q  49 atatttaacatgaaaaactctataatactaagagaaaaaccacatgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 146  Q
    ||||||||| || ||||| || ||||||  || ||||||||||  |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  12930938 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 12930841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 49 - 146
Target Start/End: Complemental strand, 12935684 - 12935587
Alignment:
Q  49 atatttaacatgaaaaactctataatactaagagaaaaaccacatgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 146  Q
    ||||||||| || ||||| || ||||||  || ||||||||||  |||||||||| ||||||||| || ||||||||| |||||||||||||||||||    
T  12935684 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattctctc 12935587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 13225183 - 13225117
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  13225183 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcttgcccttttaaaaca 13225117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 41681135 - 41681201
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  41681135 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 41681201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 33328161 - 33328225
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| || ||||||| ||||||||||    
T  33328161 ttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcatgcccttttaaaaca 33328225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 9178179 - 9178113
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| || ||||||| | ||||||||    
T  9178179 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcatgccctcttaaaaca 9178113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 19176291 - 19176357
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| | ||| |||| ||||||||||    
T  19176291 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactagtcctgcccttttaaaaca 19176357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 19176834 - 19176768
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||||||||| || ||||| |||| ||||||||||    
T  19176834 gcttaattacacttttggtcctcgtgttttggcctactcacgtaactggtcctgcccttttaaaaca 19176768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 31133764 - 31133698
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| || || |||| ||||||||||    
T  31133764 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactgatcctgcccttttaaaaca 31133698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 33742923 - 33742989
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| |||||||  ||||||||||||| ||||| |||| ||||||||||    
T  33742923 gcttaattacacttttggtcctcgtgttttgacctactcacgaaactggtcttgcccttttaaaaca 33742989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 34541092 - 34541026
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||  ||||||||||    
T  34541092 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgctcttttaaaaca 34541026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 44831248 - 44831314
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||||||||  |||||| |||||||||||||| ||||| |||| ||||||||||    
T  44831248 gcttaattacacttttggtcctcatgttttggcctactcacgaaattggtcctgcccttttaaaaca 44831314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 252
Target Start/End: Complemental strand, 33328683 - 33328618
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||| | |||||||||| |||||||||||||||||||||| | |||||||  ||||||||||    
T  33328683 cttaattagacttttggtcctcgtgttttagcctactcacgaaactagtcatgctcttttaaaaca 33328618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 9930201 - 9930137
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||||| |||||||||| || |||| |||||||||||||| ||||| |||| ||||||||    
T  9930201 gcttaattacacttttggtcctcgtattttggcctactcacgaaactggtcctgcccttttaaaa 9930137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 143
Target Start/End: Original strand, 26504985 - 26505044
Alignment:
Q  84 aaaaccacatgacaaactccaaaaaatatttcattatattaaaaaatattacaatattct 143  Q
    |||||||||  |||||||||||||||||||  | |||| |||||||||||||||||||||    
T  26504985 aaaaccacagtacaaactccaaaaaatattcaactataataaaaaatattacaatattct 26505044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 236
Target Start/End: Complemental strand, 11657001 - 11656951
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtc 236  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| |||||    
T  11657001 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtc 11656951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 12571864 - 12571930
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||  | || ||||||||||    
T  12571864 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggttctacccttttaaaaca 12571930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 31133221 - 31133287
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| |||||||  ||||||||||||| |||||  ||| ||||||||||    
T  31133221 gcttaattacacttttggtcctcgtgttttgccctactcacgaaactggtcccgcccttttaaaaca 31133287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 41681678 - 41681612
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||| |||||||| ||||| | || ||||||||||    
T  41681678 gcttaattacacttttggtcctcgtgttttggcctaatcacgaaactggtcctacccttttaaaaca 41681612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 301 - 370
Target Start/End: Complemental strand, 2618011 - 2617942
Alignment:
Q  301 aaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacatgtcat 370  Q
    |||| |||||| |||||||| || ||||||||||||| ||||||  |||||||| ||||| |||||||||    
T  2618011 aaaatcgctgatatggcaaaagaccacctatgtggcagtgccaacttggaaaatgacattaacatgtcat 2617942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 9928912 - 9928976
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||| |||||||   |||||||||||| ||||| |||| ||||||||||    
T  9928912 ttaattacacttttggtcctcgtgttttgatctactcacgaaactggtcctgcccttttaaaaca 9928976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 12572393 - 12572329
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||| ||||||| | |||||||||||| | |||||||  ||||||||||    
T  12572393 ttaattacacttttggtcctcgtgttttggtctactcacgaaactagtcatgctcttttaaaaca 12572329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 13224645 - 13224707
Alignment:
Q  189 taattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||| |||||||| | ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  13224645 taattacacttttggtcttcgtgttttggcctactcacgaaactggtc-tgcccttttaaaaca 13224707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 8074083 - 8074029
Alignment:
Q  198 ttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||| ||||||| ||||| ||||||||||| ||||| | ||||||||||    
T  8074083 ttttggtcctcgtgttttggcctattcacgaaaatgatcatgtccttttaaaaca 8074029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 11337066 - 11337000
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||| | ||||||| || ||||||||||| |||||  ||| ||||||||||    
T  11337066 gcttaattacacttttggtcttcgtgttttggcttactcacgaaattggtcccgcccttttaaaaca 11337000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 44831789 - 44831723
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||| ||| |||||||||| ||||||| || ||||||||||| ||||| |||  ||||||||||    
T  44831789 gcttaataacacttttggtcctcgtgttttggcatactcacgaaactggtcctgctcttttaaaaca 44831723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 287 - 372
Target Start/End: Complemental strand, 8073977 - 8073894
Alignment:
Q  287 ccattttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacatgtcatta 372  Q
    |||||||| |||| ||||||||||| |||| ||| ||| |||||||||||| ||||||   ||||||| ||||| |||||||||||    
T  8073977 ccattttaccctccaaaaacgctgatatggtaaa-gaa-acctatgtggcagtgccaactgggaaaatgacattaacatgtcatta 8073894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 186 - 238
Target Start/End: Original strand, 599533 - 599585
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcat 238  Q
    ||||||||||||||||||||||||  ||||  || |||||||||| |||||||    
T  599533 gcttaattacatttttggtccttgcattttgaccaactcacgaaattggtcat 599585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1585 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold1585
Description:

Target: scaffold1585; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 568 - 634
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||| |||| ||||||| ||||||||||||||||| ||||||| ||||||||||    
T  568 gcttaattacacttttgatcctcgtgttttggcctactcacgaaaatgatcatgcccttttaaaaca 634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 19590526 - 19590592
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  19590526 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 19590592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 34533792 - 34533858
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| |||||||||  ||||||||||    
T  34533792 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcatgctcttttaaaaca 34533858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 38859185 - 38859119
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  38859185 gcttaattacacttttggtcctcgtgttttggcctactcacgaaattggtcctgcccttttaaaaca 38859119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 49 - 146
Target Start/End: Original strand, 37040529 - 37040626
Alignment:
Q  49 atatttaacatgaaaaactctataatactaagagaaaaaccacatgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 146  Q
    ||||||||| || ||||| || ||||||  || ||||||||||  |||||||||| ||||||||| || ||||||||| |||||||||||||| ||||    
T  37040529 atatttaacgtggaaaaccctctaataccgagggaaaaaccacgggacaaactccgaaaaatattccactatattaaagaatattacaatattttctc 37040626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 188 - 252
Target Start/End: Original strand, 19830423 - 19830487
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  19830423 ttaattacacttttggtcctcgtgttttggcctactcacgaaactggtcttgcccttttaaaaca 19830487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 23952731 - 23952798
Alignment:
Q  186 gcttaattacatttttggtccttgtgtttt-agcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| | ||||||||||||| |||||||||| ||||||||||    
T  23952731 gcttaattacacttttggtcctcgtgttttgaccctactcacgaaattggtcatgcccttttaaaaca 23952798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 269 - 372
Target Start/End: Original strand, 28583541 - 28583644
Alignment:
Q  269 catttttcatcctaccatccattttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggcattgccaaactggaaaataacatttacatgtc 368  Q
    |||||||| |||||||  ||||||||||||| ||||| ||  | ||||||||||||  ||||||||||||||||||   |||||||   |||||||||||    
T  28583541 catttttcgtcctaccccccattttatcctccaaaaatgcacaaatggcaaatgaaggcctatgtggcattgccaattcggaaaatgctatttacatgtc 28583640  T
Q  369 atta 372  Q
    ||||    
T  28583641 atta 28583644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 181 - 252
Target Start/End: Complemental strand, 35289450 - 35289379
Alignment:
Q  181 aataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||| ||||||||||| ||||| |||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  35289450 aataggcttaattacacttttgatcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 35289379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 19591069 - 19591003
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||||| || ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  19591069 gcttaattacacttttggtactcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 19591003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 32004615 - 32004681
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| || || |||| ||||||||||    
T  32004615 gcttaattacacttttggtcctcgtgttttggcctactcacgaaattgatcctgcccttttaaaaca 32004681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 37786768 - 37786834
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||||| |||||| ||||| |||| ||||||||||    
T  37786768 gcttaattacacttttggtcctcgtgttttggcctacttacgaaactggtcctgcccttttaaaaca 37786834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 266
Target Start/End: Complemental strand, 28584470 - 28584388
Alignment:
Q  182 ataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    ||||||||||||||| |||| ||||| ||| ||| ||||| |||||||| |||||||| | |||||||  |||||||||||||||    
T  28584470 ataagcttaattacacttttcgtcctcgtgctttggcctattcacgaaattggtcatgtccttttaaa--acagaacaaaattgt 28584388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 266
Target Start/End: Original strand, 38160952 - 38161030
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaacacagaacaaaattgt 266  Q
    ||||||||||| |||||||||| | ||||| ||||||||||||||||  || |||| |||||||  |||||||||||||||    
T  38160952 gcttaattacacttttggtcctcgggttttggcctactcacgaaaataatcctgcccttttaaa--acagaacaaaattgt 38161030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 2658840 - 2658904
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||||| |||| ||||| ||||||| |||||||||||||| ||||| |||| ||||||||    
T  2658840 gcttaattacactttttgtcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaa 2658904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 250
Target Start/End: Complemental strand, 32005158 - 32005094
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||||| ||||||||||  |||||| || ||||||||||| |||||||||| ||||||||    
T  32005158 gcttaattacacttttggtcctcatgttttggcatactcacgaaactggtcatgcccttttaaaa 32005094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 19830963 - 19830897
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||| ||| ||||| || | ||||||||||    
T  19830963 gcttaattacacttttggtcctcgtgttttggcctactcacaaaactggtcctgtccttttaaaaca 19830897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 35288904 - 35288970
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||| | || |||| |||||||||||||| ||||| |||| ||||||||||    
T  35288904 gcttaattacacttttggtcatcgtattttggcctactcacgaaactggtcctgcccttttaaaaca 35288970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 4478242 - 4478178
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||| |||| ||||| |||| ||||||| |||||||||||||| ||||| |||| ||||||||||    
T  4478242 ttaagtacacttttgatcctcgtgttttggcctactcacgaaactggtcctgcccttttaaaaca 4478178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 181 - 252
Target Start/End: Original strand, 28583435 - 28583506
Alignment:
Q  181 aataagcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||| ||||||||||| |||||||||| ||||||| ||||||||| || | ||||  |||| ||||||||||    
T  28583435 aataggcttaattacacttttggtcctcgtgttttggcctactcatgagattggttctgcccttttaaaaca 28583506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 197 - 252
Target Start/End: Original strand, 29099862 - 29099917
Alignment:
Q  197 tttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||||| |||||||||||||| || || |||| ||||||||||    
T  29099862 tttttggtcctcgtgttttggcctactcacgaaactgatcctgcccttttaaaaca 29099917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 249
Target Start/End: Complemental strand, 37787311 - 37787248
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaa 249  Q
    ||||||||| | |||||||||| ||||||| |||||||||||||| ||||| |||  |||||||    
T  37787311 gcttaattatacttttggtcctcgtgttttggcctactcacgaaactggtcctgctcttttaaa 37787248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 2659384 - 2659318
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| | ||||| ||||| ||| |||| ||||| |||| ||||||||||    
T  2659384 gcttaattacaattttggtcctcgcgttttggcctattcatgaaactggtcttgcccttttaaaaca 2659318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 38858644 - 38858710
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||| ||| |||||||||| ||||||| || ||||||||||| ||||| |||  ||||||||||    
T  38858644 gcttaataacacttttggtcctcgtgttttggcatactcacgaaactggtcctgctcttttaaaaca 38858710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 85 - 146
Target Start/End: Complemental strand, 15290454 - 15290393
Alignment:
Q  85 aaaccacatgacaaactccaaaaaatatttcattatattaaaaaatattacaatattctctc 146  Q
    |||||||  |||||||||||||| || || || |||||| || |||||||||||||||||||    
T  15290454 aaaccacgggacaaactccaaaagattttccactatatttaagaatattacaatattctctc 15290393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 236
Target Start/End: Original strand, 4641443 - 4641491
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtc 236  Q
    ||||||||| |||||||||| ||||||| || ||||||||||| |||||    
T  4641443 ttaattacacttttggtcctcgtgttttggcttactcacgaaactggtc 4641491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0951 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0951
Description:

Target: scaffold0951; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 1668 - 1734
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| ||||||||||  |||||| |||||||||||||| ||||| |||| ||||||||||    
T  1668 gcttaattacacttttggtcctcctgttttggcctactcacgaaactggtcctgcccttttaaaaca 1734  T

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Target: scaffold0951; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 2211 - 2145
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||||| |||||| ||||| |||| ||||||||||    
T  2211 gcttaattacacttttggtcctcgtgttttggcctacttacgaaactggtcctgcccttttaaaaca 2145  T

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Target: scaffold0417 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0417
Description:

Target: scaffold0417; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 11167 - 11101
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| ||||||| |||||| ||||| |||| ||||||||||    
T  11167 gcttaattacacttttggtcctcgtgttttggcctacttacgaaactggtcctgcccttttaaaaca 11101  T

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Target: scaffold0176 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Original strand, 18836 - 18902
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||| |||||| ||||||||||| |||||| |||||||||||||| ||||| |||| ||||||||||    
T  18836 gcttcattacacttttggtccttctgttttggcctactcacgaaactggtcttgcccttttaaaaca 18902  T

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Target: scaffold0176; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 19165 - 19099
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| | ||| |||| ||||||||||    
T  19165 gcttaattacacttttggtcctcgtgttttggcctactcacgaaacttgtcctgcccttttaaaaca 19099  T

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Target: scaffold0019 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 134217 - 134155
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaa 248  Q
    ||||||||||| |||||||||| ||||||| |||||||||||||| | |||||||| ||||||    
T  134217 gcttaattacacttttggtcctcgtgttttggcctactcacgaaactagtcatgcccttttaa 134155  T

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Target: scaffold0432 (Bit Score: 37; Significance: 0.000000000009; HSPs: 2)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 188 - 248
Target Start/End: Original strand, 9935 - 9995
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaa 248  Q
    |||||||||||||||||||| ||||||||||||| |||||||| || || |||| ||||||    
T  9935 ttaattacatttttggtcctcgtgttttagcctattcacgaaactgatcttgcccttttaa 9995  T

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Target: scaffold0432; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 10414 - 10350
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||| ||||||| | |||||||||||| ||||  | || ||||||||||    
T  10414 ttaattacacttttggtcctcgtgttttggtctactcacgaaactggtgtttcccttttaaaaca 10350  T

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Target: scaffold0057 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: scaffold0057
Description:

Target: scaffold0057; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 186 - 250
Target Start/End: Original strand, 61029 - 61093
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    |||||| |||| ||||| |||| ||||||| ||||||||||||||||| || |||||||||||||    
T  61029 gcttaagtacacttttgatcctcgtgttttggcctactcacgaaaatgatcctgccattttaaaa 61093  T

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Target: scaffold0057; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 263 - 337
Target Start/End: Complemental strand, 61907 - 61833
Alignment:
Q  263 ttgttacatttttcatcctaccatccattttatcctcaaaaaacgctgagatggcaaatgaacacctatgtggca 337  Q
    |||||| ||||||| |||||||  ||||||| ||||| ||||||||||| ||||||||  || ||||||||||||    
T  61907 ttgttatatttttcgtcctaccccccattttgtcctccaaaaacgctgatatggcaaaaaaatacctatgtggca 61833  T

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Target: scaffold0057; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 188 - 250
Target Start/End: Complemental strand, 62000 - 61938
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaa 250  Q
    ||||||||| ||||| |||| ||||||| | |||||||||||||||||| | || ||||||||    
T  62000 ttaattacacttttgatcctcgtgttttggtctactcacgaaaatggtcctacccttttaaaa 61938  T

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Target: scaffold1223 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold1223
Description:

Target: scaffold1223; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 1285 - 1219
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||| ||||| ||||||| || ||||||||||| ||||| |||| ||||||||||    
T  1285 gcttaattacacttttagtcctcgtgttttggcttactcacgaaactggtcctgcccttttaaaaca 1219  T

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Target: scaffold1223; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 252
Target Start/End: Original strand, 755 - 820
Alignment:
Q  187 cttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||| |||||||| | ||||||| |||||||||||| | ||||| |||| ||||||||||    
T  755 cttaattacacttttggtcttcgtgttttggcctactcacgatactggtcctgcccttttaaaaca 820  T

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Target: scaffold0273 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 186 - 252
Target Start/End: Complemental strand, 4751 - 4685
Alignment:
Q  186 gcttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||||| |||||||| | ||||||| || ||||||||||| ||||| |||| ||||||||||    
T  4751 gcttaattacacttttggtcttcgtgttttggcatactcacgaaactggtcctgcccttttaaaaca 4685  T

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Target: scaffold0007 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 188 - 252
Target Start/End: Complemental strand, 64847 - 64783
Alignment:
Q  188 ttaattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    ||||||||| |||||||||| ||||||| || ||||||||||| |||||  ||| ||||||||||    
T  64847 ttaattacacttttggtcctcgtgttttggcatactcacgaaactggtcccgcccttttaaaaca 64783  T

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Target: scaffold1696 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold1696
Description:

Target: scaffold1696; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 189 - 252
Target Start/End: Original strand, 454 - 516
Alignment:
Q  189 taattacatttttggtccttgtgttttagcctactcacgaaaatggtcatgccattttaaaaca 252  Q
    |||||||||||| |||| | ||||||| |||||||||||||||||||||||   ||||||||||    
T  454 taattacatttt-ggtcttcgtgttttggcctactcacgaaaatggtcatgatcttttaaaaca 516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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