View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_high_22 (Length: 337)
Name: NF18796_high_22
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_high_22 |
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| [»] scaffold0147 (1 HSPs) |
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Alignment Details
Target: scaffold0147 (Bit Score: 59; Significance: 6e-25; HSPs: 1)
Name: scaffold0147
Description:
Target: scaffold0147; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 116 - 234
Target Start/End: Original strand, 24015 - 24134
Alignment:
| Q |
116 |
tgttattttttctggattgnnnnnnnattgatacaattattcattttgaaaccaggtactgaagctgcaaccaggaacaagggagcatatgcttcta-ct |
214 |
Q |
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||||||||||||||||||| |||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| || |
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| T |
24015 |
tgttattttttctggattgcttgtttgttgatacattgattcattttgaaaccaggtactgaagctgcacccaggaacaagggagcagctgcttctacct |
24114 |
T |
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| Q |
215 |
aagtctttggaactttgctt |
234 |
Q |
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||||||| ||||| |||||| |
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| T |
24115 |
aagtcttcggaacgttgctt |
24134 |
T |
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