View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_high_24 (Length: 327)
Name: NF18796_high_24
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_high_24 |
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Alignment Details
Target: chr5 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 8 - 321
Target Start/End: Complemental strand, 28538409 - 28538095
Alignment:
| Q |
8 |
catttaagcttagattaaaaattgtgaaaagaagaccaaagttcctcaattaaaatacgaggttaatattgcagtttttt-cacaatgggggaacaaatc |
106 |
Q |
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| T |
28538409 |
catttaagcttagattaaaaattgtgaaaaggagaccaaagttcctcaattaaaatacgaggttaatattgcagtttttttcacaatgggggaacaaatc |
28538310 |
T |
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| Q |
107 |
gtttaaaattgtgtttttattattattgttgtagttatgtttttagtttataaattccacttaagtactgtaataaaaatgtgctgacataattcctgaa |
206 |
Q |
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| T |
28538309 |
gtttaaaattgtgcttttattattattgttgtagttatgtttttagtttataaattccaattaagtactgtaataaaaatgtgctgacataattcctgaa |
28538210 |
T |
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| Q |
207 |
ttgtacactgaatggaaaatctggggacgtattttaaaaaacttggccctacttttttgttgcactatcattccatcttttagttctacttagtaatttt |
306 |
Q |
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| T |
28538209 |
ttgtgcactgaatggaaaatctggggacgtattttaaaaaacttggccctacttttttgttgcactatcattccatcttttagttctagttagtaatttt |
28538110 |
T |
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| Q |
307 |
tgcttatctcattat |
321 |
Q |
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| T |
28538109 |
tgcttatcttattat |
28538095 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 120 - 209
Target Start/End: Complemental strand, 28537065 - 28536976
Alignment:
| Q |
120 |
tttttattattattgttgtagttatgtttttagtttataaattccacttaagtactgtaataaaaatgtgctgacataattcctgaattg |
209 |
Q |
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| T |
28537065 |
tttttattattattgttgtatttatgtttttagtttataaattccacataaattatgtaaaaaaaatgtggtgacatagttcctgaattg |
28536976 |
T |
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