View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18796_high_38 (Length: 262)
Name: NF18796_high_38
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_high_38 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 11)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 247
Target Start/End: Complemental strand, 39460436 - 39460190
Alignment:
| Q |
1 |
tggttcgatgtttgggggaagagagacttctggaaggttgatgatgtcgagagaatcggaggtgggaagagatttagtgttaacatcggattttgttgtg |
100 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||| || |||| |
|
|
| T |
39460436 |
tggttcgatgtttgggggaagagaaacttctggaaggttgatgatgtcgagagaatcagaagtgggaagtgatttagtgttaacatcggattctgatgtg |
39460337 |
T |
|
| Q |
101 |
tatgggagtttcatgactaggacagttattcggaggcggttatcacggtttgttagaatcttcgcaaactcaagggtggaatctagatggctcggaccgg |
200 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||| ||| || |||||||||||||||||||||||||||||||||| |
|
|
| T |
39460336 |
tatgggagtttcatgactaggacagtaattcggaggcgcttatcacggttggttagaagctttgcgaactcaagggtggaatctagatggctcggaccgg |
39460237 |
T |
|
| Q |
201 |
gaaaagggataaacacaacttctgctttcttcatcttggagcacagg |
247 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39460236 |
gaaaagggataaacacaacttctgctttcttcatcttggagcacagg |
39460190 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 9 - 240
Target Start/End: Complemental strand, 39475684 - 39475453
Alignment:
| Q |
9 |
tgtttgggggaagagagacttctggaaggttgatgatgtcgagagaatcggaggtgggaagagatttagtgttaacatcggattttgttgtgtatgggag |
108 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||| |||||| || ||| | ||||| ||||||||||| ||||| || |||| ||| ||||| |
|
|
| T |
39475684 |
tgtttgggggaagagaaacttctggaaggttgatgatgttgagagattctgagataggaagggatttagtgttgacatcattttctgttatgtgtgggaa |
39475585 |
T |
|
| Q |
109 |
tttcatgactaggacagttattcggaggcggttatcacggtttgttagaatcttcgcaaactcaagggtggaatctagatggctcggaccgggaaaaggg |
208 |
Q |
| |
|
||| || |||| ||||||| |||||| ||||||||||| || |||||| |||| |||||||||| |||||| |||||||||| |||||||||||||| |
|
|
| T |
39475584 |
tttgataactaaaacagttactcggagacggttatcacgattgattagaagcttcacaaactcaagtgtggaaattagatggctcagaccgggaaaaggg |
39475485 |
T |
|
| Q |
209 |
ataaacacaacttctgctttcttcatcttgga |
240 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| |
|
|
| T |
39475484 |
ataaacaccacttctgctttcttcatcttgga |
39475453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 39451178 - 39450940
Alignment:
| Q |
9 |
tgtttgggggaagagagacttctggaaggttgatgatgtcgagagaatcggaggtgggaagagatttagtgttaacatcggattttgttgtgtatgggag |
108 |
Q |
| |
|
||||||| |||||||| |||||||||||||||||||||| ||||||||| ||| | ||||| ||||||||||| ||||| || || | | | ||||| |
|
|
| T |
39451178 |
tgtttggaggaagagaaacttctggaaggttgatgatgttgagagaatctgagataggaagggatttagtgttgacatcattttctgatatatgtgggaa |
39451079 |
T |
|
| Q |
109 |
tttcatgactaggacagttattcggaggcggttatcacggtttgttagaatcttcgcaaactcaagggtggaatctagatggctcggaccgggaaaaggg |
208 |
Q |
| |
|
||| || |||| ||||||| |||||| ||||||||||| || |||||| |||||| || |||||||||||| ||||||||||| ||| ||||||||| |
|
|
| T |
39451078 |
tttgataactaaaacagttactcggagacggttatcacgattgattagaagcttcgcgaattcaagggtggaaactagatggctcacaccaggaaaaggg |
39450979 |
T |
|
| Q |
209 |
ataaacacaacttctgctttcttcatcttggagcacagg |
247 |
Q |
| |
|
|||||||| ||||||||||||||||||||| |||||||| |
|
|
| T |
39450978 |
ataaacaccacttctgctttcttcatcttgaagcacagg |
39450940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 15 - 247
Target Start/End: Original strand, 39464531 - 39464763
Alignment:
| Q |
15 |
ggggaagagagacttctggaaggttgatgatgtcgagagaatcggaggtgggaagagatttagtgttaacatcggattttgttgtgtatgggagtttcat |
114 |
Q |
| |
|
|||||||||| ||||||||||||||||||| | |||||||| || |||||| |||||||||| |||||||||| || || | ||||||||| || |
|
|
| T |
39464531 |
ggggaagagaaacttctggaaggttgatgacattaagagaatcagatatgggaatggatttagtgtagacatcggattctgcggtttgtgggagtttgat |
39464630 |
T |
|
| Q |
115 |
gactaggacagttattcggaggcggttatcacggtttgttagaatcttcgcaaactcaagggtggaatctagatggctcggaccgggaaaagggataaac |
214 |
Q |
| |
|
||||| || ||||||||||| |||||||||||||| |||||| ||||||||||||||||| ||| ||||||| | | ||||||||||||||||| |
|
|
| T |
39464631 |
gactaagatggttattcggagacggttatcacggttgattagaagcttcgcaaactcaagggcagaaactagatgacctacagcgggaaaagggataaac |
39464730 |
T |
|
| Q |
215 |
acaacttctgctttcttcatcttggagcacagg |
247 |
Q |
| |
|
|| ||||||||||||||||| ||| |||||||| |
|
|
| T |
39464731 |
actacttctgctttcttcattttgaagcacagg |
39464763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 9 - 247
Target Start/End: Complemental strand, 39472214 - 39471976
Alignment:
| Q |
9 |
tgtttgggggaagagagacttctggaaggttgatgatgtcgagagaatcggaggtgggaagagatttagtgttaacatcggattttgttgtgtatgggag |
108 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||| ||| ||||||||| | ||||| |||||||||| ||||||| || ||| ||| ||||| |
|
|
| T |
39472214 |
tgtttggggcaagagaacattctggaaggttgatgatgtggagtgaatcggagataggaagggatttagtgtagacatcggtttctgtgatgtgtgggaa |
39472115 |
T |
|
| Q |
109 |
tttcatgactaggacagttattcggaggcggttatcacggtttgttagaatcttcgcaaactcaagggtggaatctagatggctcggaccgggaaaaggg |
208 |
Q |
| |
|
||| || |||| |||||||||||||| |||||||||||||| |||||| |||||||||||| || | ||| ||| ||| | | | | ||||||||| |
|
|
| T |
39472114 |
tttgataactaaaacagttattcggagacggttatcacggttgattagaagcttcgcaaactcgagagcagaaactatatgaccctcagccggaaaaggg |
39472015 |
T |
|
| Q |
209 |
ataaacacaacttctgctttcttcatcttggagcacagg |
247 |
Q |
| |
|
| |||||| |||||||||||||||||||||||||||||| |
|
|
| T |
39472014 |
acaaacaccacttctgctttcttcatcttggagcacagg |
39471976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 39454817 - 39454592
Alignment:
| Q |
9 |
tgtttgggggaagagagacttctggaaggttgatgatgtcgagagaatcggaggtgggaagagatttagtgttaacatcggattttgttgtgtatgggag |
108 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| || ||||||||| | |||||||||||| ||| ||||| | || || | || ||| | |
|
|
| T |
39454817 |
tgtttgggggaagagagcattctggaaggttgatgatgcggattgaatcggagattggaagagatttactgtatacatcagtttcagtggcgtgtggaaa |
39454718 |
T |
|
| Q |
109 |
tttcatgactaggacagttattcggaggcggttatcacggtttgttagaatcttcgcaaactcaagggtggaatctagatggctcggaccgggaaaaggg |
208 |
Q |
| |
|
||| | ||||| |||||||||||||| |||||||||||||| |||||| ||||| ||||||||||||||| ||| ||||| ||| ||| ||||| |
|
|
| T |
39454717 |
tttgaggactaaaacagttattcggagacggttatcacggttgattagaagtttcgcgaactcaagggtggaaactaaatggccaacaccaggagaaggg |
39454618 |
T |
|
| Q |
209 |
ataaacacaacttctgctttcttcat |
234 |
Q |
| |
|
|||||||| ||||||||||||||||| |
|
|
| T |
39454617 |
ataaacaccacttctgctttcttcat |
39454592 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 12 - 245
Target Start/End: Original strand, 39470751 - 39470984
Alignment:
| Q |
12 |
ttgggggaagagagacttctggaaggttgatgatgtcgagagaatcggaggtgggaagagatttagtgttaacatcggattttgttgtgtatgggagttt |
111 |
Q |
| |
|
||||| ||| ||| ||||||||||||||||||| | ||||||||| ||| |||||| ||||||| || ||||| |||| || |||| ||||| ||| |
|
|
| T |
39470751 |
ttgggagaacagaaacttctggaaggttgatgacatggagagaatcagagatgggaatggatttagcgtagacatcagattctgcagtgtgtgggaattt |
39470850 |
T |
|
| Q |
112 |
catgactaggacagttattcggaggcggttatcacggtttgttagaatcttcgcaaactcaagggtggaatctagatggctcggaccgggaaaagggata |
211 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||| |||| |||||| ||| || ||||| | || ||| ||||||| | | |||||||||||||| |
|
|
| T |
39470851 |
catgactaagacagttattcagaggcggttatcatggttgattagaagcttggcgaactctaaggcagaaactagatgacctacagcgggaaaagggata |
39470950 |
T |
|
| Q |
212 |
aacacaacttctgctttcttcatcttggagcaca |
245 |
Q |
| |
|
||||| ||||| |||||||||| |||||||||| |
|
|
| T |
39470951 |
aacaccacttccactttcttcatgttggagcaca |
39470984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 39486651 - 39486406
Alignment:
| Q |
1 |
tggttcgatgtttgggggaagagagacttctggaaggttgatgatgtcgagagaatcggaggtgggaagagatttagtgttaacatcgg-at-----ttt |
94 |
Q |
| |
|
||||||| |||||||||||||||| ||||||||||||||||| | |||||||||||| ||||||| ||||| |||| |||||| || | | |
|
|
| T |
39486651 |
tggttcggtgtttgggggaagagaacattctggaaggttgatgacctggagagaatcggaaatgggaagggattttgtgtagacatcgacatcgtcatct |
39486552 |
T |
|
| Q |
95 |
gttgtgtatgggagtttcatgactaggacagttattcggaggcggttatcacggtttgttagaatcttcgcaaactcaagggtggaatctagatggctcg |
194 |
Q |
| |
|
|| |||| ||||| ||| ||||| | || ||||||||||| |||||||||||||| |||||| ||| ||||| |||||||||||| ||||||| | |
|
|
| T |
39486551 |
gtggtgtgtgggaatttgatgaccaagatggttattcggagacggttatcacggttgattagaagctttgcaaattcaagggtggaaactagatgaccaa |
39486452 |
T |
|
| Q |
195 |
gaccgggaaaagggataaacacaacttctgctttcttcatcttgga |
240 |
Q |
| |
|
||| || ||||||||| ||| ||||||||||||||||||||||| |
|
|
| T |
39486451 |
caccaggtgaagggataatcaccacttctgctttcttcatcttgga |
39486406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 10 - 240
Target Start/End: Original strand, 39458286 - 39458516
Alignment:
| Q |
10 |
gtttgggggaagagagacttctggaaggttgatgatgtcgagagaatcggaggtgggaagagatttagtgttaacatcggattttgttgtgtatgggagt |
109 |
Q |
| |
|
||||||||||||||| ||||||||||| || |||| ||||||||| | ||| ||| |||||||||| ||||| || |||||||| ||| | | |
|
|
| T |
39458286 |
gtttgggggaagagaacattctggaaggtcgacaatgttaagagaatcgtcgatggcaagggatttagtgtagacatctatttctgttgtgtgtggaaat |
39458385 |
T |
|
| Q |
110 |
ttcatgactaggacagttattcggaggcggttatcacggtttgttagaatcttcgcaaactcaagggtggaatctagatggctcggaccgggaaaaggga |
209 |
Q |
| |
|
|||||||| | || |||||||||||| |||||||||||||| |||||| ||| ||||| || ||||||||| ||||||| | ||| || ||| || |
|
|
| T |
39458386 |
ttcatgaccaagatagttattcggagacggttatcacggttgattagaagctttgcaaattcgagggtggaaactagatgaccaacaccaggtgaagaga |
39458485 |
T |
|
| Q |
210 |
taaacacaacttctgctttcttcatcttgga |
240 |
Q |
| |
|
||| ||| |||||||||||||||||| |||| |
|
|
| T |
39458486 |
taatcaccacttctgctttcttcatcctgga |
39458516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 109 - 240
Target Start/End: Complemental strand, 39480451 - 39480320
Alignment:
| Q |
109 |
tttcatgactaggacagttattcggaggcggttatcacggtttgttagaatcttcgcaaactcaagggtggaatctagatggctcggaccgggaaaaggg |
208 |
Q |
| |
|
||||||||| | |||||||||||||| |||||||||||||| |||||| |||||| || |||||||||||| ||||||| | ||| || ||||| |
|
|
| T |
39480451 |
tttcatgaccaaaacagttattcggagacggttatcacggttgattagaagcttcgcgaattcaagggtggaaactagatgaccaacaccaggtgaaggg |
39480352 |
T |
|
| Q |
209 |
ataaacacaacttctgctttcttcatcttgga |
240 |
Q |
| |
|
|||| ||| |||||||||||||||||| |||| |
|
|
| T |
39480351 |
ataatcaccacttctgctttcttcatcctgga |
39480320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 235
Target Start/End: Original strand, 43312626 - 43312730
Alignment:
| Q |
131 |
cggaggcggttatcacggtttgttagaatcttcgcaaactcaagggtggaatctagatggctcggaccgggaaaagggataaacacaacttctgctttct |
230 |
Q |
| |
|
||||| |||||||||||||| | |||| ||| ||||||||||||||||| ||| ||| | | ||| ||| ||||||||||||| |||||| ||||| |
|
|
| T |
43312626 |
cggagacggttatcacggttgatgagaagcttagcaaactcaagggtggatactaaatgtcccacacctggagaagggataaacaccacttctagtttct |
43312725 |
T |
|
| Q |
231 |
tcatc |
235 |
Q |
| |
|
||||| |
|
|
| T |
43312726 |
tcatc |
43312730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University