View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_high_39 (Length: 261)
Name: NF18796_high_39
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_high_39 |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 35 - 243
Target Start/End: Original strand, 38571678 - 38571886
Alignment:
| Q |
35 |
ttaagatgagtaatgaatgacctgatgcatttgtaggagcggaagtacatttgacaattacaatttcggaatcaaataaaggagagaacggagtctcggg |
134 |
Q |
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| T |
38571678 |
ttaagatgagtaatgaatgacctgatgcatttgtaggagcggaagtacatttaacaattgcaatttcggaatcaaataaaggagagaacggagtctcggg |
38571777 |
T |
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| Q |
135 |
aacaacgagagaaggtgtagaagaaggaagatgatgttgcttctgtggagtggggtcatcgtcgatgaggaaaacggtagggtttggatcgggttgtgag |
234 |
Q |
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| T |
38571778 |
aacaacgagagaaggtgtagaagaaggaagatgatgttgcttctgtggagtggggtcatcgtcgatgaggaaaacggtagggtgtggatcgggttgtgag |
38571877 |
T |
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| Q |
235 |
gttctgcgt |
243 |
Q |
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| T |
38571878 |
gttctgcgt |
38571886 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 184
Target Start/End: Original strand, 29984485 - 29984634
Alignment:
| Q |
35 |
ttaagatgagtaatgaatgacctgatgcatttgtaggagcggaagtacatttgacaattacaatttcggaatcaaataaaggagagaacggagtctcggg |
134 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||| ||||| || ||| |||||| |||| || || ||| ||||||||||||| || |
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| T |
29984485 |
ttaagatgagtaatgaatgacctgatgcatttgtaggagcgaaagtgcatttaacgattgcaattttagaattgaacaacggaaagaacggagtctcagg |
29984584 |
T |
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| Q |
135 |
aacaacgagagaaggtgtagaagaaggaagatgatgttgcttctgtggag |
184 |
Q |
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||||| ||||||||||||||| ||||||||||| | |||||| ||||||| |
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| T |
29984585 |
aacaatgagagaaggtgtagaggaaggaagatgtttttgcttatgtggag |
29984634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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