View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_high_47 (Length: 243)
Name: NF18796_high_47
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_high_47 |
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Alignment Details
Target: chr7 (Bit Score: 140; Significance: 2e-73; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 74 - 225
Target Start/End: Original strand, 48650345 - 48650496
Alignment:
| Q |
74 |
atatattatattttattcttgctttttgttctaaaaaataggcgttgagttgaggcatataatgtgatttaatgaatctctttctctcattcattcaggt |
173 |
Q |
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| T |
48650345 |
atatattatattttattcttgctttttgttctaaaaaataggcgttgagttttggcatataatgtgatttagtgaatctctttctctcattcattcaggt |
48650444 |
T |
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| Q |
174 |
acacgcccacctacattgcaacagatcatatgaattacaattacaatcaggt |
225 |
Q |
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| T |
48650445 |
acacgcccacctacattgcaacagatcatatgaattacaattacaatcaggt |
48650496 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 48650177 - 48650269
Alignment:
| Q |
1 |
ttatccggtggtaacacctacccctccttcctcaatattccatcatcatcacgccattcctttctacgggtatatatattatattttattctt |
93 |
Q |
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| T |
48650177 |
ttatccggtggtaacacctacacctccttcctcaatattccatcatcatcatgcccttcctttctacgggtatatatattatattttattctt |
48650269 |
T |
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