View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_high_5 (Length: 545)
Name: NF18796_high_5
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 460; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 11 - 525
Target Start/End: Original strand, 55162069 - 55162583
Alignment:
| Q |
11 |
ccaagaatatatcatcaacactgtgagtcagtccaagctaatcttcacttcagcactcacacttcaaattaaaaacaattt-----ggtgtctcataggt |
105 |
Q |
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| T |
55162069 |
ccaacaatatatcatcaacactgtgagtcagtccaagctaatcttcacttcagcactcacacttcaaattaaaaacaatttaatttggtgtctcataggt |
55162168 |
T |
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| Q |
106 |
aaggtatatattaaaagatatatagaagaatctaattatagttttgtctctctgatttgacagaaaagaaagcgtgccgtcaccgttcatgtatcagacc |
205 |
Q |
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| T |
55162169 |
-----atatattaaaagatatatagaagaatctaattatagttttgtctctctgatttgacagaaaagaaagcgtgccgtcaccgttcatgtatcagacc |
55162263 |
T |
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| Q |
206 |
ctaatggaaagaaattacaaggagcttctgtgtttgtagagcaaatatcaaaagactttcctattggctctgcgatatcaaagaccattcttggcaacat |
305 |
Q |
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| T |
55162264 |
ctaatggaaggaaattacaaggagcttctgtgtttgtagagcaaatatcaaaagactttcctattggctctgcgatagcaaagaccattcttggcaacat |
55162363 |
T |
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| Q |
306 |
accatatcagaattggtttttgaaacggttcaatgctgcagtgtttgaaaacgagcttaaatggtatgccacagagcctcatgaaggcagagtcaactac |
405 |
Q |
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| T |
55162364 |
accatatcagaattggtttttgaaacggttcaatgctgcagtgtttgaaaacgagcttaaatggtatgccacagagcctcatgaaggcagcgtcaactac |
55162463 |
T |
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| Q |
406 |
acaatttcagatcaaatgatgcaatttgttagagccaacaaaatcatagctagagggcacaatatattctgggaagaccctaaatacaatcctgcatggg |
505 |
Q |
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| T |
55162464 |
acaatttcagaccaaatgatgcaatttgttagagccaacaaaatcatagctagagggcacaatatattctgggaagaccctaaatacaatcctgcatggg |
55162563 |
T |
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| Q |
506 |
ttcttaaccttacaggtaca |
525 |
Q |
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| T |
55162564 |
ttcttaaccttacaggtaca |
55162583 |
T |
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