View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF18796_high_50 (Length: 238)
Name: NF18796_high_50
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_high_50 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25362234 - 25362455
Alignment:
| Q |
1 |
cttccatttgtcgttctcggcaaattttatctctctgttatttaacacattgtgctcttgaacaacatccttaaatagttgtagagaagaaaactccatt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25362234 |
cttccatttgtcgttctcggtaaattttatctctctgttatttaacacattgtgctcttgaacaacatccttaaatagttgtagagaagaaaactccatt |
25362333 |
T |
|
| Q |
101 |
ccgatactgaatttgaagtctttggtgatttctgtttctacattgaacttatcatattttggtttacctttcccgcaagaatctcgctcagatgcattgt |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
25362334 |
ccgatactgaatttaaagtctttggtgatttctgtttctacattgaacttatcatattttggtttatctttcctgcaagaatctcgctcagatgcattgt |
25362433 |
T |
|
| Q |
201 |
ccagttcaactgttaagttctc |
222 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
25362434 |
tcagttcaactgttaagttctc |
25362455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 25357577 - 25357723
Alignment:
| Q |
22 |
aaattttatctctctgttatttaacacattgtgctcttgaacaacatccttaaatagttgtagagaagaaaactccattccgatactgaatttgaagtct |
121 |
Q |
| |
|
||||||||| | |||| |||||| |||||| ||||| ||||||| ||||||||| | ||| |||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
25357577 |
aaattttatttttctgccatttaatacattgagctctcgaacaacgtccttaaattggtgtcgagaagtaaactccattccgatactgaatttgaagtct |
25357676 |
T |
|
| Q |
122 |
ttggtgatttctgtttctacattgaacttatcatattttggtttacc |
168 |
Q |
| |
|
||||||||||| | |||| || |||||||||||||||||| ||||| |
|
|
| T |
25357677 |
ttggtgatttcagcttctgtatagaacttatcatattttggcttacc |
25357723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 19 - 168
Target Start/End: Original strand, 25352900 - 25353049
Alignment:
| Q |
19 |
ggcaaattttatctctctgttatttaacacattgtgctcttgaacaacatccttaaatagttgtagagaagaaaactccattccgatactgaatttgaag |
118 |
Q |
| |
|
|||||||||||| | |||| |||||| |||| ||||||| ||||||| |||||||| | ||| |||||| |||||||||||| ||||||||||||||| |
|
|
| T |
25352900 |
ggcaaattttatttttctgccatttaatacatcgtgctctcgaacaacgtccttaaactggtgtcgagaagtaaactccattccaatactgaatttgaag |
25352999 |
T |
|
| Q |
119 |
tctttggtgatttctgtttctacattgaacttatcatattttggtttacc |
168 |
Q |
| |
|
|||||||||||||| | | || |||||||||||||||||||||| ||||| |
|
|
| T |
25353000 |
tctttggtgatttcagctcctgcattgaacttatcatattttggcttacc |
25353049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University