View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_high_51 (Length: 238)
Name: NF18796_high_51
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_high_51 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 238
Target Start/End: Complemental strand, 9581685 - 9581468
Alignment:
| Q |
17 |
atgaggaatgtgaacgtacattcaaacaattagaaacaataaggtgtaagacagactttaaattattaattaaaaaagctaataaggtaataaactgaaa |
116 |
Q |
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| T |
9581685 |
atgaggaatatgaacgtacattcaaacaattagaaacaataaggtgtaagacagactttaaattattaattaaaaaagctaataaggtaataaactgaaa |
9581586 |
T |
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| Q |
117 |
acatgtttggttttaaattaaattacttgacctaattccaaacttcgcaaggtttatctcacgtcattactccatcgacacaatcgttttcaatggcact |
216 |
Q |
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| T |
9581585 |
acatgtttggttttaaattaaattactt-acc---ttccaaacttcgcaaggtttatctcacgtcattactccatcgacacaatcattttcaatggcact |
9581490 |
T |
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| Q |
217 |
ttccaaactttgcatggttaat |
238 |
Q |
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|||||||||||||||||||||| |
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| T |
9581489 |
ttccaaactttgcatggttaat |
9581468 |
T |
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