View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF18796_high_6 (Length: 520)
Name: NF18796_high_6
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF18796_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 302; Significance: 1e-170; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 91 - 504
Target Start/End: Complemental strand, 33363676 - 33363261
Alignment:
| Q |
91 |
atcttagtcattgcaattgcacacaaagatactggattnnnnnnnctttataattcatgagttatggctaatctttcaagnnnnnnnctttataattcat |
190 |
Q |
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| T |
33363676 |
atcttagtcattacaattgcgcacaaagataccggattaaaaaaactttataattcatgagttatggctaatctttcaggaaaaaaactttataattcat |
33363577 |
T |
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| Q |
191 |
gtgttagggctaatctttcagaacaatctgtcacggtttatctccaaatgaaagccttttcaaatttaaaatacccaagcatcctaaatggacaatagcg |
290 |
Q |
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| T |
33363576 |
gtgttagggctaatctttcagaacaatctgtcacggtttatctccaaatgaaagccttttcaaatttaaaatacccaagcatcctaaatggacaatagcg |
33363477 |
T |
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| Q |
291 |
aatcaccatnnnnnnntattactattgtaaattgcaaaatacaatatatgg---taataatccttcaaaaatatatatggtaataaattaatctccatcg |
387 |
Q |
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| T |
33363476 |
aatcaccataaaaaaatattactattgtaaattgcaaaatacaatatatggtaataataatccttcaaaaatatatatggtaataaattaatctccatcg |
33363377 |
T |
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| Q |
388 |
atcgactgtaataggagatttcctaaaatctctataattcaaagacagaata-ttataagagaaatatcatgaatatattcatttcatacaagttatttt |
486 |
Q |
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|| ||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33363376 |
attgactgtaataggagatttcctaaaatctc--taattcaaagacagaatatttataagagaaatatcatgaatatattcatttcatacaagttatttt |
33363279 |
T |
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| Q |
487 |
gcaatgagggtattttct |
504 |
Q |
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| T |
33363278 |
gcaatgagggtattttct |
33363261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 19 - 95
Target Start/End: Complemental strand, 33363796 - 33363719
Alignment:
| Q |
19 |
ttaatcattactagcatttcgtacattgattcacatctttatccaagaacacat-gataagatgataataaatatctt |
95 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||| |
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| T |
33363796 |
ttaatcattactagcatttcgtacattgattcacatctttatccaagaacacatggatgagatgataataaatatctt |
33363719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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