View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF18796_high_7 (Length: 495)

Name: NF18796_high_7
Description: NF18796
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF18796_high_7
NF18796_high_7
[»] chr2 (4 HSPs)
chr2 (14-477)||(36095480-36095942)
chr2 (30-139)||(12023724-12023834)
chr2 (31-94)||(40100528-40100591)
chr2 (36-121)||(38764213-38764298)
[»] chr3 (5 HSPs)
chr3 (30-128)||(32324563-32324662)
chr3 (56-157)||(5404449-5404551)
chr3 (45-157)||(34964184-34964297)
chr3 (30-157)||(34199083-34199209)
chr3 (66-153)||(41904878-41904966)
[»] chr1 (2 HSPs)
chr1 (30-128)||(50414516-50414614)
chr1 (34-102)||(38753637-38753705)
[»] chr4 (5 HSPs)
chr4 (28-153)||(56576422-56576545)
chr4 (31-82)||(6418781-6418832)
chr4 (30-89)||(48190725-48190784)
chr4 (66-153)||(53380956-53381043)
chr4 (31-72)||(19195630-19195671)
[»] chr8 (1 HSPs)
chr8 (30-126)||(34195093-34195189)
[»] chr7 (1 HSPs)
chr7 (30-119)||(24890484-24890573)
[»] chr6 (3 HSPs)
chr6 (28-121)||(22506294-22506387)
chr6 (67-124)||(4003963-4004020)
chr6 (69-153)||(5455658-5455742)
[»] scaffold0034 (1 HSPs)
scaffold0034 (67-121)||(92601-92655)
[»] chr5 (1 HSPs)
chr5 (29-79)||(33179448-33179498)


Alignment Details
Target: chr2 (Bit Score: 440; Significance: 0; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 14 - 477
Target Start/End: Original strand, 36095480 - 36095942
Alignment:
Q  14 tactgctaacacacatgaatcgttcgggagaacccgagttcaattcctggtgggaacaattcttggccagactttaattacttcccagccgaactccaga 113  Q
    ||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||    
T  36095480 tactgctaa-acacatgaatcgttcgggagaacccaagttcaattcctggtgggaacaattcttggccagactttacttacctcccagccgaactccaga 36095578  T
Q  114 ttactaggcccccttcccctatgaaccaaaggattaacaccaaagaccaaaatactactactgaacttccaaaccaggccacaacttatatcattcagtt 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  36095579 ttactaggcccccttcccctatgaaccaaaggattaacaccaaagaccaaaatactactactgaacttccaaaccaggccacaacatatatcattcagtt 36095678  T
Q  214 cactaaacttataaataccaaaacacaaaagggtctaaagaaaaatttcacatacatatcaagcatgaacaacatcaaaatatagtgataaaatctaact 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36095679 cactaaacttataaataccaaaacacaaaagggtctaaagaaaaatttcacatacatatcaagcatgaacaacatcaaaatatagtgataaaatctaact 36095778  T
Q  314 cctctaaagtgaagggtgcacttgacaaggtaaagttaagaatttactcattaattgaagaactatgtataatatgatattaacctataaagatagttaa 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36095779 cctctaaagtgaagggtgcacttgacaaggtaaagttaagaatttactcattaattgaagaactatgtataatatgatattaacctataaagatagttaa 36095878  T
Q  414 aaataacttattgaatttccaatcaattaataatgcaactccacattttacatgtgactgactt 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36095879 aaataacttattgaatttccaatcaattaataatgcaactccacattttacatgtgactgactt 36095942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 30 - 139
Target Start/End: Complemental strand, 12023834 - 12023724
Alignment:
Q  30 gaatcgttcgggagaacccgagttcaattcctggtgggaacaattcttggccagactttaattacttcccagccgaactccagattactag-gccccctt 128  Q
    |||| ||||||||| |||||||||| ||||||||  |||||||||||||| ||| || || |||| ||    ||||||||||||||||||| ||||||||    
T  12023834 gaattgttcgggaggacccgagttcgattcctgggtggaacaattcttggtcaggctgtacttacctcatgaccgaactccagattactagagccccctt 12023735  T
Q  129 cccctatgaac 139  Q
    |||||| ||||    
T  12023734 cccctaggaac 12023724  T

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Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 94
Target Start/End: Complemental strand, 40100591 - 40100528
Alignment:
Q  31 aatcgttcgggagaacccgagttcaattcctggtgggaacaattcttggccagactttaattac 94  Q
    |||||||  ||||||||||||||||||||| ||  |||||||||||||||||||||||| ||||    
T  40100591 aatcgttgtggagaacccgagttcaattccagggtggaacaattcttggccagactttacttac 40100528  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 36 - 121
Target Start/End: Complemental strand, 38764298 - 38764213
Alignment:
Q  36 ttcgggagaacccgagttcaattcctggtgggaacaattcttggccagactttaattacttcccagccgaactccagattactagg 121  Q
    ||||||||||||||| ||| |||| |||  | ||||||||||| |||||||||| |||| ||||| | ||||||| ||||||||||    
T  38764298 ttcgggagaacccgaattcgattcttgggtgcaacaattcttgaccagactttacttacctcccaactgaactccggattactagg 38764213  T

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Target: chr3 (Bit Score: 56; Significance: 5e-23; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 32324662 - 32324563
Alignment:
Q  30 gaatcgttcgggagaa-cccgagttcaattcctggtgggaacaattcttggccagactttaattacttcccagccgaactccagattactaggccccctt 128  Q
    |||||||||||||||| ||||||||  |||||||||||||||||||||||||||| ||||| |||| |||| ||| |||||| |||||||||| ||||||    
T  32324662 gaatcgttcgggagaaacccgagtttgattcctggtgggaacaattcttggccaggctttacttacctcccggccaaactccggattactagggcccctt 32324563  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 56 - 157
Target Start/End: Original strand, 5404449 - 5404551
Alignment:
Q  56 attcctggtgggaacaattcttggccagactttaattacttcccagccgaactccagattact-aggcccccttcccctatgaaccaaaggattaacacc 154  Q
    ||||||| ||||||||||| |||||||||||||| |||| | ||||| ||||||| ||||||| ||| |||||||||||| | |||  ||| ||||||||    
T  5404449 attcctgatgggaacaattattggccagactttacttacctgccagctgaactccggattactaagggccccttcccctaggcaccggagggttaacacc 5404548  T
Q  155 aaa 157  Q
    |||    
T  5404549 aaa 5404551  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 157
Target Start/End: Original strand, 34964184 - 34964297
Alignment:
Q  45 acccgagttcaattcctggtgggaacaattcttggccagactttaattacttcccagccgaactccagattacta-ggcccccttcccctatgaaccaaa 143  Q
    |||||||||| ||||||  ||||||||||| ||| |||||||||| |||| ||||||||||||||||  |||||| ||| || |||||||| |||||  |    
T  34964184 acccgagttcgattcctaatgggaacaattattgaccagactttacttacctcccagccgaactccaacttactatggcacctttcccctaggaaccgga 34964283  T
Q  144 ggattaacaccaaa 157  Q
    || ||||| |||||    
T  34964284 gggttaactccaaa 34964297  T

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Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 157
Target Start/End: Complemental strand, 34199209 - 34199083
Alignment:
Q  30 gaatcgttcgggagaacccgagttcaattcctggtgggaacaattcttggccagactttaattacttcccagccgaactccagattactaggcccccttc 129  Q
    |||||||| |||||||| ||| ||| |||||||   ||||||||||||||||||  |||| |||| |||| |||||||||  ||| |||||| |||||||    
T  34199209 gaatcgtttgggagaactcga-ttcgattcctgtgtggaacaattcttggccaggatttacttacctcccggccgaactctggatcactagggccccttc 34199111  T
Q  130 ccctatgaaccaaaggattaacaccaaa 157  Q
    ||| | |||||  ||| |||||| ||||    
T  34199110 cccaaggaaccggagggttaacagcaaa 34199083  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 153
Target Start/End: Complemental strand, 41904966 - 41904878
Alignment:
Q  66 ggaacaattcttggccagactttaattacttcccagccgaactccagattactag-gcccccttcccctatgaaccaaaggattaacac 153  Q
    ||||||||||||| |||||||||| |||  || ||||| |||||| ||||||||| |||||  ||||| | ||||| |||| |||||||    
T  41904966 ggaacaattcttgaccagactttatttagctcgcagccaaactccggattactagcgcccctctcccccaagaaccgaagggttaacac 41904878  T

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Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 30 - 128
Target Start/End: Complemental strand, 50414614 - 50414516
Alignment:
Q  30 gaatcgttcgggagaacccgagttcaattcctggtgggaacaattcttggccagactttaattacttcccagccgaactccagattactaggccccctt 128  Q
    |||| |||| ||||||||||||||||||||||||  ||||||||||||||| |||||||  |||| |||  |||||||| | |||||||||| ||||||    
T  50414614 gaattgttcaggagaacccgagttcaattcctgggtggaacaattcttggctagacttttcttacctcctggccgaactacggattactagggcccctt 50414516  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 34 - 102
Target Start/End: Original strand, 38753637 - 38753705
Alignment:
Q  34 cgttcgggagaacccgagttcaattcctggtgggaacaattcttggccagactttaattacttcccagc 102  Q
    ||||||||||||||||||||| |||||||   |||| ||| ||||||| ||||||| |||| |||||||    
T  38753637 cgttcgggagaacccgagttcgattcctgactggaaaaatccttggccggactttacttacctcccagc 38753705  T

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Target: chr4 (Bit Score: 46; Significance: 5e-17; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 28 - 153
Target Start/End: Original strand, 56576422 - 56576545
Alignment:
Q  28 atgaatcgttcgggagaacccgagttcaattcctggtgggaacaattcttggccagactttaattacttcccagccgaactccagattactaggccccct 127  Q
    |||||||||||| |||||||||||||  || ||||||||||| ||||| | |||| |||||| |||| |||| |||||||||| | |||||||| ||||     
T  56576422 atgaatcgttcgagagaacccgagtttgatacctggtgggaataattc-tagccaaactttacttacctcccggccgaactccgggttactagg-ccccg 56576519  T
Q  128 tcccctatgaaccaaaggattaacac 153  Q
    |||||||||||||  ||| |||||||    
T  56576520 tcccctatgaaccggagggttaacac 56576545  T

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Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 31 - 82
Target Start/End: Complemental strand, 6418832 - 6418781
Alignment:
Q  31 aatcgttcgggagaacccgagttcaattcctggtgggaacaattcttggcca 82  Q
    ||||||||||||||||||||||||||||||||   |||||||||||||||||    
T  6418832 aatcgttcgggagaacccgagttcaattcctgtgtggaacaattcttggcca 6418781  T

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Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 30 - 89
Target Start/End: Original strand, 48190725 - 48190784
Alignment:
Q  30 gaatcgttcgggagaacccgagttcaattcctggtgggaacaattcttggccagacttta 89  Q
    ||||||||||||||||||||||||  |||||| |  |||||||||| |||||||||||||    
T  48190725 gaatcgttcgggagaacccgagtttgattcctaggtggaacaattcctggccagacttta 48190784  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 66 - 153
Target Start/End: Original strand, 53380956 - 53381043
Alignment:
Q  66 ggaacaattcttggccagactttaattacttcccagccgaactccagattactaggcccccttcccctatgaaccaaaggattaacac 153  Q
    |||||||||||||||||| ||||| |||| |||| ||| |||| | |||||| ||||||  |||||||| |||||  ||| |||||||    
T  53380956 ggaacaattcttggccaggctttacttacctcccggccaaactacggattaccaggcccttttcccctaagaaccggagggttaacac 53381043  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 72
Target Start/End: Complemental strand, 19195671 - 19195630
Alignment:
Q  31 aatcgttcgggagaacccgagttcaattcctggtgggaacaa 72  Q
    |||||||||||||||||||||||| ||||||||  |||||||    
T  19195671 aatcgttcgggagaacccgagttcgattcctgggtggaacaa 19195630  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 30 - 126
Target Start/End: Complemental strand, 34195189 - 34195093
Alignment:
Q  30 gaatcgttcgggagaacccgagttcaattcctggtgggaacaattcttggccagactttaattacttcccagccgaactccagattactaggccccc 126  Q
    |||||||| |||||||||||||||||||||||  | ||||||||| |||||||| ||||| |||| |||| || | |||||||||||| ||| ||||    
T  34195189 gaatcgtttgggagaacccgagttcaattcctactaggaacaatttttggccaggctttacttacctcccggctgtactccagattaccagggcccc 34195093  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 119
Target Start/End: Original strand, 24890484 - 24890573
Alignment:
Q  30 gaatcgttcgggagaacccgagttcaattcctggtgggaacaattcttggccagactttaattacttcccagccgaactccagattacta 119  Q
    ||||| ||| ||||||||||||||  ||||||  |||||||||||||||| ||||||||| |||| | | ||||| |||| |||||||||    
T  24890484 gaatctttcaggagaacccgagtttgattcctaatgggaacaattcttggtcagactttacttaccttctagccggactctagattacta 24890573  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 28 - 121
Target Start/End: Original strand, 22506294 - 22506387
Alignment:
Q  28 atgaatcgttcgggagaacccgagttcaattcctggtgggaacaattcttggccagactttaattacttcccagccgaactccagattactagg 121  Q
    |||||| ||| ||||||| |||||||| |||||| || ||||||||| ||||||||||| |  |||| || | |||||||||| | ||||||||    
T  22506294 atgaattgtttgggagaagccgagttcgattcctagttggaacaattattggccagactatccttacctcactgccgaactccgggttactagg 22506387  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 67 - 124
Target Start/End: Original strand, 4003963 - 4004020
Alignment:
Q  67 gaacaattcttggccagactttaattacttcccagccgaactccagattactaggccc 124  Q
    |||||||| |||||||||| ||| |||| |||  |||||||||| |||||||||||||    
T  4003963 gaacaattattggccagaccttacttacctcctggccgaactccggattactaggccc 4004020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 69 - 153
Target Start/End: Original strand, 5455658 - 5455742
Alignment:
Q  69 acaattcttggccagactttaattacttcccagccgaactccagattactaggcccccttcccctatgaaccaaaggattaacac 153  Q
    ||||||| ||| || | |||| |||| |||| | |||||||  |||||||| | |||||| ||||| ||||||||||||||||||    
T  5455658 acaattcatggtcatattttatttacctcccggacgaactcttgattactaagacccctttccctaggaaccaaaggattaacac 5455742  T

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Target: scaffold0034 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 92655 - 92601
Alignment:
Q  67 gaacaattcttggccagactttaattacttcccagccgaactccagattactagg 121  Q
    |||||||| |||||||||||||| |||| || || ||||||||||||||| ||||    
T  92655 gaacaatttttggccagactttacttacctctcaaccgaactccagattattagg 92601  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 79
Target Start/End: Original strand, 33179448 - 33179498
Alignment:
Q  29 tgaatcgttcgggagaacccgagttcaattcctggtgggaacaattcttgg 79  Q
    |||||||||| |||||| |||||||| ||||||| ||| ||||||||||||    
T  33179448 tgaatcgttcaggagaagccgagttcgattcctgatggaaacaattcttgg 33179498  T

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